PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g31600.1.p
Common NameLOC104584179
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 203aa    MW: 21764.4 Da    PI: 5.0893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g31600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.98.9e-172676156
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                      + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g+
  Bradi3g31600.1.p 26 PVYRGVRLR--AGKWVSEIRElR-----KpNRIWLGTYPTPEMAAAAYDAAALALRGA 76
                      68****975..6*********55.....579************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-112675IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-172784IPR016177DNA-binding domain
SMARTSM003801.8E-222789IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-252784IPR001471AP2/ERF domain
PROSITE profilePS5103218.7292783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEQQGREISG MMSLCGRRAR AETRHPVYRG VRLRAGKWVS EIRELRKPNR IWLGTYPTPE  60
MAAAAYDAAA LALRGAGTAL NFPDAARSRP APRSVSADDV RAAAAEAAAS FAAVATSAWT  120
TTTERSSDDQ YHRPHCNQLR GGGDVMGVVD EDDVFEMPRL MASMAEGLMI SPPDGGAVAP  180
YYDVLQVEDE GDAAAVSLWD HA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-121283172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g31600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236639.11e-145ethylene-responsive transcription factor ERF024
SwissprotQ9SJR03e-37ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLI1I5J51e-144I1I5J5_BRADI; Uncharacterized protein
STRINGBRADI3G31600.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-20ERF family protein