PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g28970.2.p | ||||||||
Common Name | BRADI_3g28970, LOC100844190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92397.3 Da PI: 5.3997 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 31 | 89 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ ++r++L +++ +++ rq+kvWFqNrR ++k+ Bradi3g28970.2.p 31 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEARQIKVWFQNRRCRDKQ 89 5678****************************************************996 PP | |||||||
2 | START | 164.3 | 9e-52 | 169 | 376 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ ++ g g+++ Bradi3g28970.2.p 169 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTQLPAGngGTIE 260 7899******************************************************9999999999.****************9999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l Bradi3g28970.2.p 261 LVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHMVDHLDLEAWSVPEVL 353 ****************************************9999998888899**************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+++ ++k+++a+l++ + Bradi3g28970.2.p 354 RPLYESSRVVAQKMTTAALRHIR 376 *******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 10 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.516 | 26 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-15 | 28 | 94 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.11E-16 | 30 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.90E-16 | 31 | 91 | No hit | No description |
Pfam | PF00046 | 4.1E-16 | 32 | 89 | IPR001356 | Homeobox domain |
CDD | cd14686 | 9.38E-6 | 72 | 122 | No hit | No description |
PROSITE profile | PS50848 | 27.47 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 7.08E-72 | 163 | 379 | No hit | No description |
SMART | SM00234 | 6.6E-40 | 168 | 378 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.2E-23 | 168 | 354 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.63E-37 | 169 | 380 | No hit | No description |
Pfam | PF01852 | 9.1E-50 | 169 | 376 | IPR002913 | START domain |
Pfam | PF08670 | 6.2E-48 | 698 | 840 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MAAAVAMRSG SGSGSDGGGG GYDKGGMDSG KYVRYTPEQV EALERVYAEC PKPTSTRRQQ 60 LLRECPILSN IEARQIKVWF QNRRCRDKQR KESSRLQAVN RKLSAMNKLL MEENERLQKQ 120 VSQLVHENAY MKQQLQNPSL ANDTSCESNV TTPQNPPRDA SNPAGLLTIA EETLTEFLSK 180 ATGTAVDWVP MPGMKPGPDS FGIVAISHGC RGVAARACGL VNLEPTKIVE ILKDRPSWFR 240 DCRSLEVFTQ LPAGNGGTIE LVYMQMYAPT TLVPARDFWT LRYTTTMEDG SLVVCERSLS 300 GSGGGPSTAS AQQFVRAEML PSGYLVRPCD GGGSIVHMVD HLDLEAWSVP EVLRPLYESS 360 RVVAQKMTTA ALRHIRQIAQ ETSGEVVYAL GRQPAVLRTF SQRLSRGFND AISGFNDDGW 420 SVMGGDGIED VIIACNSKKI RSNTAAPSAF ESPGGVICAK ASMLLQSVPP AVLVRFLREH 480 RSEWADYNFD AYSASALKTS SCSLPGLRPM RFSGSQIIMP LAHTVENEEI LEVVRLEGQA 540 LDEGLLSRDI HLLQFCTGID EKSMGSCFQL VFAPIDELFP DDAPLISSGF RVIPLDMKTD 600 GTPTGRTLDL ASSLEVGSTT LQAPGNTSLD DSNLRSVLTI AFQFPYEMHL QDTVATMARQ 660 YVRSIVSAVQ RVSMAISPSR SGLNAEQKII SGFPEAATLA RWICQSYQFH LGVELVRQAD 720 EAGESLLRML WDYEDAILCC SFKEKPVFTF ANEMGINMLE TSFLALQDLS LDKIFDEAGR 780 KALYSEIPKL MEQGYVYLPA GVCLSGMGRH VSFEQAIAWK VLGEDNNVHC LAFCFVNWSF 840 V* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g28970.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362009 | 0.0 | AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574071.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | I1I4S1 | 0.0 | I1I4S1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G28970.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g28970.2.p |
Entrez Gene | 100844190 |