PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g28970.1.p
Common NameBRADI_3g28970, LOC100844190
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92397.3 Da    PI: 5.3997
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g28970.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-183189357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  Bradi3g28970.1.p 31 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEARQIKVWFQNRRCRDKQ 89
                      5678****************************************************996 PP
2START164.39e-521693762204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+  ++  g  g+++
  Bradi3g28970.1.p 169 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTQLPAGngGTIE 260
                       7899******************************************************9999999999.****************9999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++l
  Bradi3g28970.1.p 261 LVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHMVDHLDLEAWSVPEVL 353
                       ****************************************9999998888899**************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+++ ++k+++a+l++ +
  Bradi3g28970.1.p 354 RPLYESSRVVAQKMTTAALRHIR 376
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-191089IPR009057Homeodomain-like
PROSITE profilePS5007115.5162690IPR001356Homeobox domain
SMARTSM003892.3E-152894IPR001356Homeobox domain
SuperFamilySSF466894.11E-163092IPR009057Homeodomain-like
CDDcd000866.90E-163191No hitNo description
PfamPF000464.1E-163289IPR001356Homeobox domain
CDDcd146869.38E-672122No hitNo description
PROSITE profilePS5084827.47159387IPR002913START domain
CDDcd088757.08E-72163379No hitNo description
SMARTSM002346.6E-40168378IPR002913START domain
Gene3DG3DSA:3.30.530.208.2E-23168354IPR023393START-like domain
SuperFamilySSF559613.63E-37169380No hitNo description
PfamPF018529.1E-50169376IPR002913START domain
PfamPF086706.2E-48698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAAAVAMRSG SGSGSDGGGG GYDKGGMDSG KYVRYTPEQV EALERVYAEC PKPTSTRRQQ  60
LLRECPILSN IEARQIKVWF QNRRCRDKQR KESSRLQAVN RKLSAMNKLL MEENERLQKQ  120
VSQLVHENAY MKQQLQNPSL ANDTSCESNV TTPQNPPRDA SNPAGLLTIA EETLTEFLSK  180
ATGTAVDWVP MPGMKPGPDS FGIVAISHGC RGVAARACGL VNLEPTKIVE ILKDRPSWFR  240
DCRSLEVFTQ LPAGNGGTIE LVYMQMYAPT TLVPARDFWT LRYTTTMEDG SLVVCERSLS  300
GSGGGPSTAS AQQFVRAEML PSGYLVRPCD GGGSIVHMVD HLDLEAWSVP EVLRPLYESS  360
RVVAQKMTTA ALRHIRQIAQ ETSGEVVYAL GRQPAVLRTF SQRLSRGFND AISGFNDDGW  420
SVMGGDGIED VIIACNSKKI RSNTAAPSAF ESPGGVICAK ASMLLQSVPP AVLVRFLREH  480
RSEWADYNFD AYSASALKTS SCSLPGLRPM RFSGSQIIMP LAHTVENEEI LEVVRLEGQA  540
LDEGLLSRDI HLLQFCTGID EKSMGSCFQL VFAPIDELFP DDAPLISSGF RVIPLDMKTD  600
GTPTGRTLDL ASSLEVGSTT LQAPGNTSLD DSNLRSVLTI AFQFPYEMHL QDTVATMARQ  660
YVRSIVSAVQ RVSMAISPSR SGLNAEQKII SGFPEAATLA RWICQSYQFH LGVELVRQAD  720
EAGESLLRML WDYEDAILCC SFKEKPVFTF ANEMGINMLE TSFLALQDLS LDKIFDEAGR  780
KALYSEIPKL MEQGYVYLPA GVCLSGMGRH VSFEQAIAWK VLGEDNNVHC LAFCFVNWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g28970.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574071.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLI1I4S10.0I1I4S1_BRADI; Uncharacterized protein
STRINGBRADI3G28970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein