PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g28950.1.p
Common NameBRADI_3g28950, LOC100830217
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 687aa    MW: 74768.1 Da    PI: 7.1724
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g28950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24121222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  Bradi3g28950.1.p 121 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 209
                       89****************************996555555..8999*********************************************..5 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       ++ +el+v+++r+
  Bradi3g28950.1.p 210 TEHGELCVGIRRA 222
                       5999*******97 PP
2Auxin_resp119.62.4e-39277360183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a+++++FevvY+Prast+eFvvk++++++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Bradi3g28950.1.p 277 AASLAANGQPFEVVYYPRASTPEFVVKAASMQAAMRIHWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 360
                       68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-36113224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29114225IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-21120221No hitNo description
SMARTSM010198.5E-22121223IPR003340B3 DNA binding domain
PfamPF023624.9E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929121223IPR003340B3 DNA binding domain
PfamPF065077.9E-34277360IPR010525Auxin response factor
PROSITE profilePS5174519.244591671IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MKEVGEERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANSGGGGA AAELAATVGP  60
RLLPALVLCS VAGVRFLADP ETDEVFAKIR LVPVGPDEVA FREPEGLGPL EAEAQEKLAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW STFVNQKKLV AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECVSGWNAPG  240
YGGFSAFLKD EENKMMNSTG GYLKGRGKLK IADVVEAASL AANGQPFEVV YYPRASTPEF  300
VVKAASMQAA MRIHWCPGMR FKMAFETEDS SRISWFMGTI SSVQVADPIR WPNSPWRLLQ  360
VSWDEPDLLQ NVKCVSPWLV ELVSSIPPIH LGPFSPPRKK LRVPQHPDFP FDGHLFNPIF  420
HGNPLGPSNS SLRCYPDNSP AGIQGARHAQ FGLPLTDHQL NKLHLGLFQG GGFNRLDALT  480
PSSRIPKGCM ISSAPAHDSV SCLLTIGTPQ STEKSDDRKT PHIMLFGKAI LTEQQMTSSG  540
SRDTLSSGAT ANSSPYGNAP KAGNTSDGSG SSICIGFSSQ GHESSDFGLE AGHCKVFMES  600
EDVGRTIDLS DFVSYEELYG RLADMFGIEK EEIISHLRYR DTAGTVMHTG ELPFSDFMKV  660
ARRLTIISGD SGRLPKPLIE CMAQRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-791038551392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g28950.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3635000.0AK363500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016A11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234830.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLI1I4R90.0I1I4R9_BRADI; Auxin response factor
STRINGBRADI3G28950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]