PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g28850.1.p | ||||||||
Common Name | BRADI_3g28850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 26282 Da PI: 9.0795 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 73 | 92 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r Bradi3g28850.1.p 73 PCTECGKRFPSWKALFGHMR 92 6******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.91 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0037 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.37E-9 | 72 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 73 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.1E-9 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.37E-9 | 162 | 189 | No hit | No description |
Pfam | PF13912 | 1.5E-10 | 167 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.84 | 167 | 189 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.016 | 167 | 189 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 169 | 189 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGWRRPTIDP SNSMEPPQPP PPPPPPPRRH EMSLTLTLAL PPPALMTIPS KPRRVARCSP 60 TATGADSSTP PSPCTECGKR FPSWKALFGH MRCHPDRQWR GITPPPYLVR APPGPGASGQ 120 CFSVQEREVA ASLLMLSSGK GKKKTAAASA SASPGPSATT AENCEEHRCG VCDRGFASGQ 180 ALGGHKRCHW ERAACAAVIG GNGAGSSGAA SMSVQAAAAA AGAALDLNLP PPVRESDQPG 240 SSLNEMLDLK LGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g28850.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317180.1 | 1e-158 | zinc finger protein ZAT3-like | ||||
TrEMBL | A0A2K2CZU6 | 1e-180 | A0A2K2CZU6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G28850.1 | 1e-157 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 9e-20 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g28850.1.p |