PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g28003.1.p | ||||||||
Common Name | BRADI_3g28003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 214aa MW: 24322.8 Da PI: 9.0245 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 25.3 | 2.1e-08 | 124 | 147 | 12 | 35 |
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 W +gp+g ++LCnaCG++yr+ +l Bradi3g28003.1.p 124 WCEGPEGRRMLCNACGMRYRSGRL 147 779*****************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 7.6E-5 | 123 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.3E-5 | 124 | 144 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.1E-6 | 124 | 147 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVLVDGLRGD AVADDLFFSG VTSRSSSTWR YLFVWSFCGS RSVPKLRFKG YFLQRLEVTA 60 AGIGEGKEEE ELEWLVDKDA FPLVETMAPK PSLVEEPRAT DESPSPRCFE QRGGAPRRGL 120 GRWWCEGPEG RRMLCNACGM RYRSGRLVPE YRPISSPTFP PGLHSNRHSR VVQMRLLPRV 180 KNLQLYYQAM MCSHTVPYSR ATWSIQSESK EHN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g28003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0Q3FB29 | 1e-156 | A0A0Q3FB29_BRADI; Uncharacterized protein | ||||
STRING | Si039011m | 3e-35 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5169 | 34 | 51 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 4e-21 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g28003.1.p |