PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g27690.1.p
Common NameBRADI_3g27690, LOC100843180
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 122aa    MW: 12799 Da    PI: 5.3147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g27690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-191262255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ + +g
  Bradi3g27690.1.p 12 KYRGVRTRP-WGKFAAEIRDPERG--GGRVWLGTFDTAEEAARAYDRAAFAQRG 62
                      8*****999.**********7333..49**********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.59E-291170No hitNo description
SMARTSM003805.6E-331276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-301271IPR001471AP2/ERF domain
PROSITE profilePS5103223.5911270IPR001471AP2/ERF domain
PfamPF008476.3E-131262IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-231271IPR016177DNA-binding domain
PRINTSPR003672.2E-111324IPR001471AP2/ERF domain
PRINTSPR003672.2E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MDGEKKDGGT AKYRGVRTRP WGKFAAEIRD PERGGGRVWL GTFDTAEEAA RAYDRAAFAQ  60
RGATAVLNFP REAGSGSGSS SSAPAGAGRG RGRADTGKIE LECLDDSVLD ELLDEDKYGG  120
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-301210814114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g27690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0259075e-61AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence.
GenBankAP0149665e-61AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126185e-61CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573983.12e-80ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLI1I4C45e-79I1I4C4_BRADI; Uncharacterized protein
STRINGBRADI3G27690.18e-80(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-20ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]