PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g27520.3.p
Common NameBRADI_3g27520
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 288aa    MW: 31094.2 Da    PI: 10.0892
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g27520.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP841.2e-2693179371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i k +k+ei+wkg
  Bradi3g27520.3.p  93 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnsnigspdpdnpntqqyDEKNIRRRVYDALNVLMAMDIIYK-DKKEIQWKG 179
                       689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-4488185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-3691179IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.71E-2094180IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-2494179IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011384.4E-10186286IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.37E-19186250No hitNo description
PfamPF087818.4E-16187249IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVPGARSTGG VAHSASNSAA NAGSPSGRSR PGKGAAAAAA TTSASTSTPA RGSTVARRLS  60
DLEIKGDGAP SPQTAASKKK KKGAHVVGPD KGNRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFSDPN SNIGSPDPDN PNTQQYDEKN IRRRVYDALN VLMAMDIIYK DKKEIQWKGL  180
PRTSMSDIDK LKIKLIGQKG RIDKKSAYLQ ELQDQYVGLQ NLVERNEQLY SSGDAPSGGV  240
ALPFILVQEH PFFFKIGIWI LLEHLQQQQV PKTGYSKCAL LQQVPQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3690184693PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g27520.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727520.0AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573972.10.0transcription factor-like protein DPB
SwissprotQ9FNY29e-94DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0Q3Q5G90.0A0A0Q3Q5G9_BRADI; Uncharacterized protein
STRINGBRADI3G27520.11e-180(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-94Transcription factor DP