PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g27520.2.p | ||||||||
Common Name | BRADI_3g27520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 303aa MW: 32578.8 Da PI: 10.1388 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.9 | 1.3e-26 | 93 | 179 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i k +k+ei+wkg Bradi3g27520.2.p 93 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnsnigspdpdnpntqqyDEKNIRRRVYDALNVLMAMDIIYK-DKKEIQWKG 179 689*******...*****999************************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.5E-44 | 88 | 185 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.0E-36 | 91 | 179 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-24 | 94 | 179 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.26E-20 | 94 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 7.06E-19 | 186 | 251 | No hit | No description |
SMART | SM01138 | 1.5E-9 | 186 | 293 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.3E-15 | 187 | 248 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MVPGARSTGG VAHSASNSAA NAGSPSGRSR PGKGAAAAAA TTSASTSTPA RGSTVARRLS 60 DLEIKGDGAP SPQTAASKKK KKGAHVVGPD KGNRGLRQFS MKVCEKVESK GRTTYNEVAD 120 ELVAEFSDPN SNIGSPDPDN PNTQQYDEKN IRRRVYDALN VLMAMDIIYK DKKEIQWKGL 180 PRTSMSDIDK LKIKLIGQKG RIDKKSAYLQ ELQDQYVGLQ NLVERNEQLY SSGDAPSGGV 240 ALPFILVQFQ YMIQFQGASI FFQDRNMDSL RASPATASSQ NWLFKMCTSP AGSPKLIPYI 300 SL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-36 | 90 | 184 | 6 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g27520.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK372752 | 0.0 | AK372752.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011E24. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573972.1 | 1e-180 | transcription factor-like protein DPB | ||||
Swissprot | Q9FNY2 | 5e-93 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0Q3JEW6 | 0.0 | A0A0Q3JEW6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G27520.1 | 1e-180 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03415.1 | 6e-94 | Transcription factor DP |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g27520.2.p |