PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g24000.1.p | ||||||||
Common Name | BRADI_3g24000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25183.6 Da PI: 8.9685 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.9e-19 | 89 | 137 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+++ta+eAa a++ a+ +l+g Bradi3g24000.1.p 89 YRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAQEAALAYDGAAFRLRG 137 9******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.6E-35 | 88 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 88 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.958 | 88 | 145 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 88 | 145 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-13 | 89 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.38E-29 | 89 | 145 | No hit | No description |
PRINTS | PR00367 | 9.5E-11 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MATAMDRHWR RLAASSTSPS SSSRLPASPP LGPIETEYSR LMLPPAMAAK QSTAMAHLIG 60 ANYYHLVTVA PCAMKRQGLL PALASKQLYR GVRQRHWGKW VAEIRLPRNR TRLWLGTYDT 120 AQEAALAYDG AAFRLRGDAA RLNFPGLRPP PPLHPSVHTK LDAALASAAN ELTADGADVS 180 TTGSSSSSSG QAAPLSEEMQ MLDFSEAPWD EADGFALRKY PSWEIDLDAI LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 84 | 145 | 1 | 63 | ATERF1 |
3gcc_A | 2e-19 | 84 | 145 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g24000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 1e-50 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
GenBank | KJ727515 | 1e-50 | KJ727515.1 Zea mays clone pUT5374 AP2-EREBP transcription factor (EREB112) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571744.2 | 1e-167 | ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q9LM15 | 1e-42 | RA213_ARATH; Ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | A0A2K2CZ47 | 1e-166 | A0A2K2CZ47_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G24000.1 | 1e-164 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 3e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g24000.1.p |
Publications ? help Back to Top | |||
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