PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g21460.5.p | ||||||||
Common Name | BRADI_3g21460, LOC100821626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27146 Da PI: 4.6717 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.8 | 1.2e-10 | 129 | 175 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h + ErrRR+++ + f++L +++P a K +K++ L A++Y+++L+ Bradi3g21460.5.p 129 EHVASERRRREKMHHQFATLASIIPDiA------KTDKVSLLGSAIQYVHKLE 175 69999*********************88......***************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.649 | 125 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-15 | 129 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 129 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 130 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.54E-11 | 130 | 179 | No hit | No description |
SMART | SM00353 | 1.6E-12 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDSSSNQWLT ELENVELVEN LDLVDEISMQ QLAESLAEEL IPRDDQPHHK SLMPSLAAGI 60 PFTGGFNNST ESFPTGANSV FSFSDGSSVS SLNFSTPLEP PTTGGSYYCP SPSSEKRLSG 120 RRTSLSIQEH VASERRRREK MHHQFATLAS IIPDIAKTDK VSLLGSAIQY VHKLEEKLKA 180 LKEHQSTVST AESAPMFDVH CCIGNTGDGK EDDCEKDCMQ GEEGGADHGA HGAGEAWLVN 240 HEHQCCAVW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | ERRRRE |
2 | 134 | 139 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g21460.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755614.1 | 0.0 | transcription factor MYC3 isoform X2 | ||||
TrEMBL | A0A0Q3FDB2 | 0.0 | A0A0Q3FDB2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G21460.1 | 1e-158 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 1e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g21460.5.p |
Entrez Gene | 100821626 |