PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g21390.2.p
Common NameBRADI_3g21390
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BBR-BPC
Protein Properties Length: 377aa    MW: 41441.5 Da    PI: 10.1545
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g21390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind359.28.7e-11013331301
         GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki............rernlalsekkaavaerd..................... 57 
                       mdddgs   rn+g+++p    ++nlglqlmss++   rd+k+            +   +  +++++++                         
  Bradi3g21390.2.p   1 MDDDGSLGmRNWGFFDPP--TRNNLGLQLMSSMPadRRDTKQllstgpyvhqhhH---VHPHAPQHTH---Hhphphphprdgcggvssgapg 85 
                       9*****999*******99..7899*********9866899999****99963330...3233333322...11234555566*********** PP

         GAGA_bind  58 ......maflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpiee 139
                             ++f++++++l++   a+++r+ k+l+ +++ +s       +++ +g+++++gt+ +++lq+++  + e+++ + ++ e+++ + +ee
  Bradi3g21390.2.p  86 dstyipVNFVRNEAWLHQ---AHHPREPKILHAITAGHSGHvvhaaHHEQAGYGIIPGTHGMHTLQMMQ--KAEPQPPPPPKDECISPPLVEE 173
                       ******************...****************9988889999999*****************54..455555666799********** PP

         GAGA_bind 140 aaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqS 232
                       +a +++e + +kk+q+ ++pk++k kk+kk ++  ++ v k+   +r++ +kk++++v+ng++lD s++P+PvC+CtGa++qCY+WG+GGWqS
  Bradi3g21390.2.p 174 NAGVVNELPPPKKKQQRRQPKSPKPKKPKKANAPCEDGVPKPA--PRKRGPKKHVGMVINGIDLDLSRIPTPVCTCTGAQQQCYRWGAGGWQS 264
                       ******************************8877777777777..89********************************************** PP

         GAGA_bind 233 aCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       aCCtttiS+yPLP++tkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  Bradi3g21390.2.p 265 ACCTTTISTYPLPMNTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 333
                       ********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.1E-1171333IPR010409GAGA-binding transcriptional activator
SMARTSM012263.1E-1861333IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDDDGSLGMR NWGFFDPPTR NNLGLQLMSS MPADRRDTKQ LLSTGPYVHQ HHHVHPHAPQ  60
HTHHHPHPHP HPRDGCGGVS SGAPGDSTYI PVNFVRNEAW LHQAHHPREP KILHAITAGH  120
SGHVVHAAHH EQAGYGIIPG THGMHTLQMM QKAEPQPPPP PKDECISPPL VEENAGVVNE  180
LPPPKKKQQR RQPKSPKPKK PKKANAPCED GVPKPAPRKR GPKKHVGMVI NGIDLDLSRI  240
PTPVCTCTGA QQQCYRWGAG GWQSACCTTT ISTYPLPMNT KRRGARIAGR KMSHGAFKKV  300
LEKLAGEGYN LNNPIDLKTF WAKHGTNKFV TIRPSLIIMK GPNTACVFNL NVFCFFVVLP  360
KLTVNLAANN EDTLHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g21390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573749.10.0barley B recombinant-like protein A
SwissprotP0DH881e-130BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-130BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0Q3FA070.0A0A0Q3FA07_BRADI; Uncharacterized protein
STRINGBRADI3G21390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-58basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]