PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g20512.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 649aa    MW: 75244 Da    PI: 8.5587
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g20512.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.65.3e-1068152490
              FAR1   4 neYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       n Y+ e+GF +r ++s++        k+    t+++ vC +e +++++         ++++ r+gC   +++ +++d+ w++++++l+HnH+l
  Bradi3g20512.1.p  68 NLYSWEIGFGIRYERSHNYkcksgpkKDVIYRTMQNIVCGCEEFPTKK---------NTSSVRCGCGTFIRLLRSDDHGWYIKDCKLQHNHPL 151
                       679********9887666534444322222223445566666655554.........5679*******************************9 PP

              FAR1  90 a 90 
                       +
  Bradi3g20512.1.p 152 S 152
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-768152IPR004330FAR1 DNA binding domain
PfamPF105512.7E-17281357IPR018289MULE transposase domain
PROSITE profilePS509669.31548584IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MGHIRLEKEY GRLATKPPLF SISHCEVLRA SALENSLRGF AHRTTDNILC SEIGLCFDSL  60
PEAYEYSNLY SWEIGFGIRY ERSHNYKCKS GPKKDVIYRT MQNIVCGCEE FPTKKNTSSV  120
RCGCGTFIRL LRSDDHGWYI KDCKLQHNHP LSQNIGEKLC WPSHKHIDRY TRELVRNLRQ  180
NNVPLTKVYS ILGTYFGSTD DVPFNKRSLE NLCKQLSKEE ANDDVWKTME LFTKMRDEDL  240
SFVYTTDLDS DGKIRTLIWV NGKSKLDYRY FGDAITFDTT YKTKIFNNHF QSIIFSGVLM  300
SQETIQSFEW IFCEFTSLMG GKAPRTILTD QCRAMEVAIA RVFPNTTHRW CKWHVLKMAK  360
EKLGSVYSKY SNFKSEFHKL INYSITVVEF QSAWEELIEK YDLKEHHFLT PIYEFRHRWA  420
EPYFSGVFCA KMTSTQRSES TNHMLKGYVP PGAPMHLFVK QYNKLIADRI SKEDAENQGS  480
RMGGVVLKTG WPIEKHAATI YTSAMLEMFS DHIFDSVAYN AIEVAPNKKY LTVHSEASRR  540
QKWSKVHYKI TISDDGGHYQ CECGLTEHMG MLCCHAIRVM LRLGINKVPD SHILKRWTKE  600
ANDVLPHHLA HLQKDRGSLR SQSYRHASLH VAALELATIG DKNIECYHQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g20512.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317341.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CYI10.0A0A2K2CYI1_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-74FAR1-related sequence 5