PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g20427.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 699aa    MW: 80180 Da    PI: 8.4611
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g20427.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.65.5e-1536123190
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       ++Yn Y+ evGF +r s+sk+        k+    t ++ vC  +g++++++++         + r+gCka++++ +++d+ w++++++l+Hn
  Bradi3g20427.1.p  36 EYYNLYSWEVGFGIRYSRSKSYkcksgprKDVVYKTVQHIVCGSQGFPQKQNTS---------SVRCGCKAMIRLLRSEDHGWYIKECKLQHN 119
                       69*************988776656677533333445678999999999986555.........9***************************** PP

              FAR1  87 Hela 90 
                       H+l+
  Bradi3g20427.1.p 120 HKLS 123
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1136123IPR004330FAR1 DNA binding domain
PfamPF105513.8E-15246310IPR018289MULE transposase domain
PROSITE profilePS509669.174513549IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
PGPLEKALRG FALRTTEEIL CPQIGLCFDS LPEAYEYYNL YSWEVGFGIR YSRSKSYKCK  60
SGPRKDVVYK TVQHIVCGSQ GFPQKQNTSS VRCGCKAMIR LLRSEDHGWY IKECKLQHNH  120
KLSRNRGEKL CWPSHKHIDQ CTRELVRNLR ENNVPPTKVY SILGTYFGST EDIPFNKRSL  180
QNLCKQISKE EANDDVRKTM DIFTKMRDED PSFVHTADLD SDGRIRTLIW VNGKSKLDYR  240
YFGDAITFDT TYKTNLYGMP FGLFVGVNNH FQSIIFSGVL MRQETIESFE WIFREFTSLM  300
GGKPPVTILT GFIVNSTHKC IHFQRFRIFR EKGACSYWAV ARTILYHIVS SFEIECHTMY  360
ILYVPYYLHI CHLIHVCHSA YCLSSLLIDI GIFCAKMTST QRSESANHML KGYVPPGAPM  420
HLFVKQYNKL IADRISKEDS ENQRTRMGEV VLKTGWPIEK HVATVYTSAM LEMFSDRIFD  480
SAAYNVVEVE VNKKYMTIHS DASKREKWSK VHYDVTISDD GGQYHCECGL AEHMGMLCCH  540
SIRVMLRLGV DKIPQPHILK RWTKDANDVL PDYLAHLQKD RGSTRSQSFR HASLHVAALE  600
LVAIGEKNVD CYHDVLNYMK DGTKKFGEMY QQTDGRSLQD LLLAPIVPSE VENCSNVVPG  660
LLHAGALAPV RNRPVGRPTN TRDKPSYEHR CVTDQYCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g20427.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2CYH20.0A0A2K2CYH2_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-52FAR1-related sequence 5