PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g19927.1.p
Common NameBRADI_3g19927, LOC100846624
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 361aa    MW: 38960.6 Da    PI: 5.758
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g19927.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-073103422254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +yp++e++++L +++gL+ +q+ +WF N+R +
  Bradi3g19927.1.p 310 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 342
                       69*****************************87 PP
2ELK27.95.2e-10263284122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y+++L+++++E++
  Bradi3g19927.1.p 263 ELKHELKQGYKEKLVDIREEIL 284
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-1898142IPR005540KNOX1
PfamPF037901.4E-16101141IPR005540KNOX1
SMARTSM012564.0E-28151207IPR005541KNOX2
PfamPF037911.6E-18159206IPR005541KNOX2
PfamPF037891.8E-6263284IPR005539ELK domain
SMARTSM011889.2E-4263284IPR005539ELK domain
PROSITE profilePS5121310.144263283IPR005539ELK domain
PROSITE profilePS5007111.774283346IPR001356Homeobox domain
SuperFamilySSF466894.28E-16285349IPR009057Homeodomain-like
SMARTSM003891.1E-10285350IPR001356Homeobox domain
CDDcd000864.72E-12286347No hitNo description
Gene3DG3DSA:1.10.10.609.1E-25290347IPR009057Homeodomain-like
PfamPF059209.5E-18303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAFHGHLPHE MAMLQPLGAD DAAAAAAAAA AGAAGGGAPP AWMRQYGGDG GSFLHLQQTT  60
SDSSPSAAAA GVQWIGAGGE EVVAAAMGGG MVVEEAEARS KAEVLAHPLY EQLLSAHVAC  120
LRIATPVDQL PRIDAQLAQS QGVVAKYSTA GGLAAGDDTR ELDQFMTHYV LLLCSFKEQL  180
QQHVRVHAME AVMACWELEQ NLQSLTGVSP GEGTGATMSD GEDDQADSEA NMYDASLDGP  240
DSMGGFGLPT ESERSLMERV RQELKHELKQ GYKEKLVDIR EEILRKRRAG KLPGDTTSTL  300
KSWWQSHSKW PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPSS STNVKSKRKR  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A9e-13286350872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339359RKRNWHSNPSSSTNVKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g19927.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234555.20.0homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLI1I2N30.0I1I2N3_BRADI; Uncharacterized protein
STRINGBRADI3G19927.40.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-163KNOTTED1-like homeobox gene 3