PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g19640.1.p
Common NameBRADI_3g19640, LOC100839101
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 585aa    MW: 63733.4 Da    PI: 6.0905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g19640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.7e-28258314259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg+nWrKYGqK+vk+s+++rsYYrCt ++C +kkkve+   d++v+ei+Y+g+H he
  Bradi3g19640.1.p 258 GDGFNWRKYGQKQVKSSDNSRSYYRCTNSSCLAKKKVEHYP-DGRVIEIIYRGTHSHE 314
                       6****************************************.***************8 PP
2WRKY101.64.7e-32429486259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++a+d + +++tYeg+Hnh+
  Bradi3g19640.1.p 429 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAADDINNMVVTYEGKHNHD 486
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-24247316IPR003657WRKY domain
SuperFamilySSF1182901.57E-22251316IPR003657WRKY domain
PROSITE profilePS5081120.931252316IPR003657WRKY domain
SMARTSM007742.5E-28257315IPR003657WRKY domain
PfamPF031061.4E-21259313IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-31422488IPR003657WRKY domain
SuperFamilySSF1182901.31E-27423488IPR003657WRKY domain
PROSITE profilePS5081133.132423488IPR003657WRKY domain
SMARTSM007748.2E-37428487IPR003657WRKY domain
PfamPF031061.3E-25430486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MADGEPVAPA EGKHPAVEAA SAEAEKHPPP EPPESAPAEA KPEKEVEMET EASEVGKAEP  60
KEMMETDASE VGKAEPKEMM ETAEASDVGK AEPKEMMEKE EVAEPKEVKV AEPKEKEAEP  120
KEAVKVKVEK KEKEKAEIVA TRRPPGSSPD APILAVPMVA VPCFIAPPGF AGQFAMSHQA  180
ALASVTAQAH MQLQSPTSSA YSEGLPSPFP HPITPIAIRP LQQAPSVTQG NVCRPIAERP  240
SPSELKVHQH QVAVNVVGDG FNWRKYGQKQ VKSSDNSRSY YRCTNSSCLA KKKVEHYPDG  300
RVIEIIYRGT HSHEPPQKTR FVKERLPHIN VSPRGEETFR LVNTEIMESS LTPTPTSNKL  360
KKSVVENSEQ QLFCSSDCEG DAGIKSEDEH PSAEPQPKRR IVEATTPNSS PVLRTVREQK  420
IIVQAGKMSD GYRWRKYGQK IVKGNPNPRS YYRCTHDGCP VRKHVEKAAD DINNMVVTYE  480
GKHNHDQPFQ SSNESRDGSI SLITSAVTAT DQTVTVASIS DQKPSTSSST QKAAETESIK  540
DTTLEHGGEK GVESAQTLLS VTNPDDMKNS LLKDTSAVVP VQNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-264284881777Probable WRKY transcription factor 4
2lex_A2e-264284881777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g19640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571606.10.0probable WRKY transcription factor 32
TrEMBLI1I2I80.0I1I2I8_BRADI; Uncharacterized protein
STRINGBRADI3G19640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Representative plantOGRP1449844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.14e-66WRKY DNA-binding protein 4