PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g19010.1.p
Common NameBRADI_3g19010, LOC100825617
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 266aa    MW: 27229.2 Da    PI: 5.6627
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g19010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-061759541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+ ++   + l+C  +   lC  C  ++H        H +vp
  Bradi3g19010.1.p 17 GCAVCGVAAAVLYCAADAAALCTPCDAAIHAAnplasrHHRVP 59
                      5*****999*********************6688999977776 PP
2CCT64.72.8e-22174217144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Re++++RY+eKr++RkF K+irY+sRKa+Ae RpR+KGrFvk+a
  Bradi3g19010.1.p 174 REEKVRRYREKREKRKFHKTIRYASRKAYAEARPRIKGRFVKRA 217
                       9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3811360IPR000315B-box-type zinc finger
SMARTSM003366.7E-121360IPR000315B-box-type zinc finger
CDDcd000211.85E-91860No hitNo description
PROSITE profilePS5101716.162174216IPR010402CCT domain
PfamPF062033.1E-17174216IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGSEGGSSGG DTSPNAGCAV CGVAAAVLYC AADAAALCTP CDAAIHAANP LASRHHRVPL  60
SSAAAMAASG VYDYDSLFAG DDEAGSTLTP PGQGSPNSGS SSFSSNGGSE RSLFELLSDV  120
DLMATDAAAA PLWMMMQPGM DAAWSLSEGV VVPSGAGAGF PSLVGGGAMV AADREEKVRR  180
YREKREKRKF HKTIRYASRK AYAEARPRIK GRFVKRAAAE ESDHDSTNGG AEGSKFWLSF  240
SDADSRDGSV GFQAPPAYGV VPSSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178185RRYREKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g19010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054952e-40AP005495.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03.
GenBankAP0057992e-40AP005799.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14.
GenBankAP0149642e-40AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-40CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8336872e-40CT833687.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571579.10.0zinc finger protein CONSTANS-LIKE 2
TrEMBLI1I2B40.0I1I2B4_BRADI; Uncharacterized protein
STRINGBRADI3G19010.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Representative plantOGRP1297945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-11CONSTANS-like 5