PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g18070.1.p
Common NameBRADI_3g18070, LOC100838809
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 171aa    MW: 17597.9 Da    PI: 11.2191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g18070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.5e-211970156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++ +GVr ++ +gr+ AeIrdp   gk+kr++lg++gta +Aa+a++aa+++l+g+
  Bradi3g18070.1.p 19 PRMRGVRKRP-WGRYSAEIRDP---GKKKRVWLGTYGTAHQAARAYDAAARRLRGP 70
                      578*******.**********8...557**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.28E-151976No hitNo description
PfamPF008477.3E-151969IPR001471AP2/ERF domain
PROSITE profilePS5103222.9322077IPR001471AP2/ERF domain
SMARTSM003805.0E-352083IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222078IPR016177DNA-binding domain
PRINTSPR003671.2E-82132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-302277IPR001471AP2/ERF domain
PRINTSPR003671.2E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAAKGEDGGG NKGRWGDEPR MRGVRKRPWG RYSAEIRDPG KKKRVWLGTY GTAHQAARAY  60
DAAARRLRGP NAKTNFPLLP PASAAAANAV PFAFLHKAPS AGSSSAAAGS SSSGATSSSS  120
TSLFRFREES PAGFLTAAPA ASLELTLGIV VPAKAAAVAF DLNFPPPAEM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-182278461ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-172278764ATERF1
3gcc_A1e-172278764ATERF1
5wx9_A4e-171077472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12443RKRPWGRYSAEIRDPGKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g18070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573559.11e-117ethylene-responsive transcription factor 9
TrEMBLI1I1Z71e-115I1I1Z7_BRADI; Uncharacterized protein
STRINGBRADI3G18070.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.18e-16ethylene responsive element binding factor 4