PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g17987.1.p

Common Name

BRADI_3g17987

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YB

Protein Properties

Length: 262aa MW: 29325.3 Da PI: 8.8448

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g17987.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	104.7	6.3e-33	1	77	17	93
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 m+kv+ n+ki+kdake vq vsefi+fvt eas kc++ek+ +i+gd llwa+atlGf+dy++plk+yl+kyr + Bradi3g17987.1.p 1 MRKVIAPNGKIGKDAKEAVQAFVSEFIAFVTREASGKCRKEKQEAITGDHLLWAMATLGFQDYIQPLKLYLQKYRGV 77 89*************************************************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-28	1	77	IPR009072	Histone-fold
SuperFamily	SSF47113	1.62E-21	1	80	IPR009072	Histone-fold
Pfam	PF00808	4.4E-12	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.6E-12	19	37	No hit	No description
PRINTS	PR00615	1.6E-12	38	56	No hit	No description
PRINTS	PR00615	1.6E-12	57	75	No hit	No description
Gene3D	G3DSA:3.80.10.10	9.3E-12	93	232	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF81383	7.36E-6	95	149	IPR001810	F-box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MRKVIAPNGK IGKDAKEAVQ AFVSEFIAFV TREASGKCRK EKQEAITGDH LLWAMATLGF 60 QDYIQPLKLY LQKYRGVLPR KMVAEPNPLP VPEVRDWSEL TVDALSAIFT KLGTIEILMG 120 AGLVCHSWLE AAKLTELWRF EDMTGHNVVF SKAGNVMCKM AKVAIDRSDG RMESFWAEKF 180 VSSELLDYIA SRGNSLKSIQ IISSGCFQDD KVARLAAKCP MLEEIECSHQ KQPAYFYKQL 240 GAVRPELKRL RIVCLGSTQM Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-25	1	75	18	92	NF-YB
4awl_B	2e-25	1	75	19	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-25	1	75	19	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g17987.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014755857.1	1e-108	putative F-box/LRR-repeat protein 23 isoform X2
Refseq	XP_014755858.1	1e-108	putative F-box/LRR-repeat protein 23 isoform X2
TrEMBL	A0A0Q3HQ32	0.0	A0A0Q3HQ32_BRADI; Uncharacterized protein
STRING	TRIUR3_23134-P1	1e-101	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP548	7	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.6	3e-34	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Bradi3g17987.1.p