PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17981.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 522aa    MW: 58193.1 Da    PI: 4.4721
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17981.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB80.32.6e-2524105594
             NF-YB   5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                        ++lPia+++rim+k++P ++ i+kda e vq  vs        ea+ kc++ k+ +++gd ll a+a+lGf dy+epl++yl+kyre+ 
  Bradi3g17981.1.p  24 GQLLPIADIGRIMRKAIPPDGDIGKDAEEAVQASVS--------EANGKCREGKQEAVTGDHLLSAMASLGFRDYIEPLQLYLHKYREMP 105
                       579*****************************9997........69******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-2325131IPR009072Histone-fold
SuperFamilySSF471131.28E-1726107IPR009072Histone-fold
PfamPF008089.9E-72682IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF813839.32E-7221281IPR001810F-box domain
Gene3DG3DSA:3.80.10.106.5E-13225302IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.5E-13384455IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520473.1E-5394453No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEDAPAASPR FGGGGGGSRE QQGGQLLPIA DIGRIMRKAI PPDGDIGKDA EEAVQASVSE  60
ANGKCREGKQ EAVTGDHLLS AMASLGFRDY IEPLQLYLHK YREMPYDGLR WGRWTKEEPE  120
EGGRDVNHAQ YKNTWCLPRF GALLTGVAMD QPSEEGMRME QHDQSEEGMI MEHEDGKDQL  180
PNGNLRPSDI IVHKKCPEMK TLPLPSTMVL PRTMEAEPKP LPVPEVRDWS ELTVDALSAI  240
FTKLGTIEIL MGAGLVCHSW LEAAKLPDLW RFVSCPRHNV VFSKAGDVMC KMAKVAVDRS  300
DGRMESFWAQ KFVSSELLDY IASRSNDARD DHGTVLCNDP RDEHGTAQSP EQYHDEDDDN  360
GDTAADDEVG PFFPGFPYGD WEARHNRVAF AIAANLHELQ LLQLAADSLT NGGVYTILDG  420
CPRLECVDLT ACRHLQVDDE LLARCAKLTH VWLPGRWPRV HCPDLRNICF EQDDLREMEA  480
RVLHNEAAVE YVGEYADNYY WEYSSGSSSQ MSDLSDVAWD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-2027103993NF-YB
4awl_B4e-20271031094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-20271031094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17981.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234465.21e-152uncharacterized protein LOC104583570 isoform X1
RefseqXP_024316314.11e-152putative F-box/LRR-repeat protein 23 isoform X3
TrEMBLA0A2K2CXY20.0A0A2K2CXY2_BRADI; Uncharacterized protein
STRINGBRADI3G17990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP548710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.33e-20nuclear factor Y, subunit B1