PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17357.5.p
Common NameBRADI_3g17357, LOC100841645
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 559aa    MW: 63247.4 Da    PI: 4.2194
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17357.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB98.45.9e-3121108794
             NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                        lPian++rim++++P n+ki ++a e vqe ++efi+++t  asd c+re++ t++g+dll a+  + ++dy++pl++yl ky  ++
  Bradi3g17357.5.p  21 NLPIANITRIMRRAIPPNGKIDREAAEAVQELATEFIAYITLVASDICKRENQETMTGEDLLCAMYAIRLDDYMDPLNLYLDKYMSTD 108
                       69**********************************************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.3E-3118125IPR009072Histone-fold
SuperFamilySSF471132.55E-2520112IPR009072Histone-fold
PfamPF008082.3E-162185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-54967No hitNo description
PRINTSPR006156.3E-56886No hitNo description
PRINTSPR006156.3E-587105No hitNo description
SuperFamilySSF813833.4E-10199257IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.7E-23200372IPR032675Leucine-rich repeat domain, L domain-like
PfamPF129378.4E-6204248IPR001810F-box domain
SuperFamilySSF520475.76E-11288364No hitNo description
SuperFamilySSF520475.76E-11400471No hitNo description
Gene3DG3DSA:3.80.10.102.7E-23410468IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MADAPASPAS AGGGEEDGGF NLPIANITRI MRRAIPPNGK IDREAAEAVQ ELATEFIAYI  60
TLVASDICKR ENQETMTGED LLCAMYAIRL DDYMDPLNLY LDKYMSTDTG DSTEQPMDEG  120
MSMEQCEQPE VVLPPLHSTV VGIAEMGQEQ GKDQLPDGNL KPSEIIVQQN CPEFKTLPLS  180
STEVLLCPME VEPIALHVPD IRHWSELPLD ALSAIFMKLG TIEILMGAGL VCRPWLAAAK  240
SPELWRFVDM TRHKVVFSKS ENIMLKMAKV AIDRSDGRME SFWAQKFVSG ELLDYIASRG  300
NSLKSIRLIA CGFCWDGAVT RLAAKCQMLE EIEYSHQKQP GDFFKQLGAV RPELKRLRIH  360
MQWFDSDAIE REMREEQQSS HDEDEEEEEE EEEPYEAWEM RHNEEAFAIA ENLHELRLLQ  420
MAGNSLTKKG VYAILEGCPH LECLDLTECD HLKVDDELLA RCAKIRHVWL PGRWPRVHCP  480
DLHTIGEDEG EVIEMDDVYE IEACALRDEG AMERGNDDYG DNYWDDYSLP SSPGSPDLPD  540
VTCDDTRYYT YIHEYYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-2222104991NF-YB
4awl_B6e-22221041092NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-22221041092NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17357.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234431.10.0F-box protein SKIP19 isoform X4
TrEMBLA0A0Q3JAZ00.0A0A0Q3JAZ0_BRADI; Uncharacterized protein
STRINGBRADI3G17357.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.76e-29nuclear factor Y, subunit B1