PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17357.4.p
Common NameBRADI_3g17357, LOC100841645
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 561aa    MW: 63502.7 Da    PI: 4.2364
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17357.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB98.17.3e-3121107793
             NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        lPian++rim++++P n+ki ++a e vqe ++efi+++t  asd c+re++ t++g+dll a+  + ++dy++pl++yl ky  +
  Bradi3g17357.4.p  21 NLPIANITRIMRRAIPPNGKIDREAAEAVQELATEFIAYITLVASDICKRENQETMTGEDLLCAMYAIRLDDYMDPLNLYLDKYMST 107
                       69**********************************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-3118129IPR009072Histone-fold
SuperFamilySSF471132.55E-2520125IPR009072Histone-fold
PfamPF008082.3E-162185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.4E-54967No hitNo description
PRINTSPR006156.4E-56886No hitNo description
PRINTSPR006156.4E-587105No hitNo description
SuperFamilySSF813833.4E-10201259IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.8E-23202374IPR032675Leucine-rich repeat domain, L domain-like
PfamPF129378.5E-6206250IPR001810F-box domain
SuperFamilySSF520474.51E-11290366No hitNo description
SuperFamilySSF520474.51E-11402473No hitNo description
Gene3DG3DSA:3.80.10.102.8E-23412470IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MADAPASPAS AGGGEEDGGF NLPIANITRI MRRAIPPNGK IDREAAEAVQ ELATEFIAYI  60
TLVASDICKR ENQETMTGED LLCAMYAIRL DDYMDPLNLY LDKYMSTDVR TGDSTEQPMD  120
EGMSMEQCEQ PEVVLPPLHS TVVGIAEMGQ EQGKDQLPDG NLKPSEIIVQ QNCPEFKTLP  180
LSSTEVLLCP MEVEPIALHV PDIRHWSELP LDALSAIFMK LGTIEILMGA GLVCRPWLAA  240
AKSPELWRFV DMTRHKVVFS KSENIMLKMA KVAIDRSDGR MESFWAQKFV SGELLDYIAS  300
RGNSLKSIRL IACGFCWDGA VTRLAAKCQM LEEIEYSHQK QPGDFFKQLG AVRPELKRLR  360
IHMQWFDSDA IEREMREEQQ SSHDEDEEEE EEEEEPYEAW EMRHNEEAFA IAENLHELRL  420
LQMAGNSLTK KGVYAILEGC PHLECLDLTE CDHLKVDDEL LARCAKIRHV WLPGRWPRVH  480
CPDLHTIGED EGEVIEMDDV YEIEACALRD EGAMERGNDD YGDNYWDDYS LPSSPGSPDL  540
PDVTCDDTRY YTYIHEYYSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-2222104991NF-YB
4awl_B6e-22221041092NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-22221041092NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17357.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234430.10.0F-box protein SKIP19 isoform X3
TrEMBLA0A0Q3F6V80.0A0A0Q3F6V8_BRADI; Uncharacterized protein
STRINGBRADI3G17357.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.74e-29nuclear factor Y, subunit B1