PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17357.3.p
Common NameBRADI_3g17357, LOC100841645
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 564aa    MW: 63777 Da    PI: 4.2098
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17357.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB98.46e-3121108794
             NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                        lPian++rim++++P n+ki ++a e vqe ++efi+++t  asd c+re++ t++g+dll a+  + ++dy++pl++yl ky  ++
  Bradi3g17357.3.p  21 NLPIANITRIMRRAIPPNGKIDREAAEAVQELATEFIAYITLVASDICKRENQETMTGEDLLCAMYAIRLDDYMDPLNLYLDKYMSTD 108
                       69**********************************************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.4E-3118125IPR009072Histone-fold
SuperFamilySSF471132.73E-2520112IPR009072Histone-fold
PfamPF008082.3E-162185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.5E-54967No hitNo description
PRINTSPR006156.5E-56886No hitNo description
PRINTSPR006156.5E-587105No hitNo description
SuperFamilySSF813833.4E-10204262IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.8E-23205377IPR032675Leucine-rich repeat domain, L domain-like
PfamPF129378.5E-6209253IPR001810F-box domain
SuperFamilySSF520474.71E-11293369No hitNo description
SuperFamilySSF520474.71E-11405475No hitNo description
Gene3DG3DSA:3.80.10.102.8E-23415473IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MADAPASPAS AGGGEEDGGF NLPIANITRI MRRAIPPNGK IDREAAEAVQ ELATEFIAYI  60
TLVASDICKR ENQETMTGED LLCAMYAIRL DDYMDPLNLY LDKYMSTDTG DSTEQPMDEG  120
MSMEQCEQPE VVLPPLHSTV VGIAEMGQEQ GKDQLPDGNL KPSEIIVQQN CPEFKTLPLS  180
STEVTLSEVL LCPMEVEPIA LHVPDIRHWS ELPLDALSAI FMKLGTIEIL MGAGLVCRPW  240
LAAAKSPELW RFVDMTRHKV VFSKSENIML KMAKVAIDRS DGRMESFWAQ KFVSGELLDY  300
IASRGNSLKS IRLIACGFCW DGAVTRLAAK CQMLEEIEYS HQKQPGDFFK QLGAVRPELK  360
RLRIHMQWFD SDAIEREMRE EQQSSHDEDE EEEEEEEEPY EAWEMRHNEE AFAIAENLHE  420
LRLLQMAGNS LTKKGVYAIL EGCPHLECLD LTECDHLKVD DELLARCAKI RHVWLPGRWP  480
RVHCPDLHTI GEDEGEVIEM DDVYEIEACA LRDEGAMERG NDDYGDNYWD DYSLPSSPGS  540
PDLPDVTCDD TRYYTYIHEY YSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-2222104991NF-YB
4awl_B6e-22221041092NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-22221041092NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17357.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234429.10.0F-box/LRR-repeat protein 17 isoform X2
TrEMBLA0A0Q3Q1E20.0A0A0Q3Q1E2_BRADI; Uncharacterized protein
STRINGBRADI3G17357.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP548710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.76e-29nuclear factor Y, subunit B1