PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17346.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YB
Protein Properties Length: 178aa    MW: 18485.8 Da    PI: 6.9658
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17346.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB66.84e-212792683
             NF-YB  6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83
                       +lP an+srim+k++P  +ki +dake vq             asdkc+rek+ +++g+dllwa+atlGf+dy++p 
  Bradi3g17346.1.p 27 LLLPTANISRIMRKAIPPGGKIDEDAKEAVQ------------AASDKCRREKQEAMTGHDLLWAMATLGFQDYMNPS 92
                      468**************************98............49******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.36E-1525108IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-1725118IPR009072Histone-fold
PfamPF008081.9E-52959IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MADAPPPLCP GCGGRSTVGG ARERDGLLLP TANISRIMRK AIPPGGKIDE DAKEAVQAAS  60
DKCRREKQEA MTGHDLLWAM ATLGFQDYMN PSSSTCTSTD SDETKANNRS GRDSKLGARR  120
TQALPGVLLD DARGGIRGGD GCGGGSCEVA VWWVEEAGAE GCGGVRFICL RALCGRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A8e-182291383NF-YB
4awl_B9e-182291484NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-182291484NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17346.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317140.14e-65nuclear transcription factor Y subunit B-1-like
SwissprotQ9SLG05e-25NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A2K2CXS11e-124A0A2K2CXS1_BRADI; Uncharacterized protein
STRINGBRADI3G17350.13e-67(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.61e-27nuclear factor Y, subunit B1