PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g17302.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 82aa MW: 9403.39 Da PI: 3.9728 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.6 | 3.5e-07 | 25 | 57 | 1 | 33 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtf 33 +fYn+YA e GFsvrks+ + + n+ei+++ + Bradi3g17302.1.p 25 EFYNSYALEKGFSVRKSYVEWDEANQEIIMKLY 57 6*********************9***9998866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-5 | 25 | 57 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MVDESVDEYL DIVGKMFGSE DDGFEFYNSY ALEKGFSVRK SYVEWDEANQ EIIMKLYDPT 60 GYYRGRAQDA CCLLSHIDAT Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g17302.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314638.1 | 8e-27 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K2CXQ3 | 3e-53 | A0A2K2CXQ3_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37795.1 | 3e-26 | (Brachypodium distachyon) | ||||
STRING | BRADI4G00925.1 | 2e-29 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 | Representative plant | OGRP11434 | 2 | 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g17302.1.p |