PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g17287.1.p | ||||||||
Common Name | BRADI_3g17287, LOC100823590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32189.7 Da PI: 8.3595 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3.1e-51 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhP+deelv +yL +k++g+ +i +vd++k+ePwdLp ++ + kewy +s rd+kyatg+r+nrat+sgyWkatgkd+++ Bradi3g17287.1.p 11 MPPGFRFHPRDEELVLDYLLHKLTGHGGAG-VAIVDVDLNKCEPWDLPDAACVGGKEWYLYSLRDRKYATGHRTNRATQSGYWKATGKDRPIR 102 79************************9666.57***************7666789************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++lvg++ktLvfy+grapkg++t+Wvmhe+rl Bradi3g17287.1.p 103 R-CRQLVGMRKTLVFYQGRAPKGTRTEWVMHEFRL 136 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-60 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.849 | 11 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-24 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MSYIGMMEAR MPPGFRFHPR DEELVLDYLL HKLTGHGGAG VAIVDVDLNK CEPWDLPDAA 60 CVGGKEWYLY SLRDRKYATG HRTNRATQSG YWKATGKDRP IRRCRQLVGM RKTLVFYQGR 120 APKGTRTEWV MHEFRLIQQD HGDHPLPRPP ARSSSDLKED WVLCRVFYKS RTTTPRPPSE 180 EACTFSSELN LQAAPPLVPL VDTYIAFEGG TTMTAVEQVT CFSGLPVLPF KGSVSFGDLL 240 SWDDPEKKAI RTALSNMPSS NSNSKLELPP NWSQENALSQ MWTPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-51 | 6 | 173 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-51 | 6 | 173 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-51 | 6 | 173 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-51 | 6 | 173 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 6 | 173 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 2e-51 | 6 | 173 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-51 | 6 | 173 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g17287.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573507.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-76 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0Q3JAX3 | 0.0 | A0A0Q3JAX3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G17287.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 7e-79 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g17287.1.p |
Entrez Gene | 100823590 |