PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g17170.4.p | ||||||||
Common Name | BRADI_3g17170, LOC100837086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 25723.4 Da PI: 10.7997 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.2e-15 | 94 | 138 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Bradi3g17170.4.p 94 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 138 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.968 | 87 | 143 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-18 | 88 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-18 | 90 | 142 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-11 | 91 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 94 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.40E-11 | 94 | 139 | No hit | No description |
Pfam | PF00249 | 1.1E-12 | 94 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPQDSRPAGM RLFGVTIAPA PDPPDHRDPN PPVPVREDVM RKCKSMGNLA ALASASASGD 60 AGGAAAADGY LSDGGLLQSS GKRRRAQERK KAVPWTEEEH RTFLAGLEKL GKGDWRGIAK 120 NFVTTRTPTQ VASHAQKYFL RQTNPNKKKR RSSLFDMMAS DLSPAPNCPI LPPTMAKLHE 180 MVAMTKQLQN SNLEGVSSSN AANVASQVGR DLPPPVPSFK ATNLDTSLVK TNRMNLLR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 150 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g17170.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951947 | 0.0 | JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755527.1 | 1e-176 | transcription factor MYBS3 isoform X2 | ||||
Swissprot | Q7XC57 | 2e-45 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | I1I1N3 | 1e-174 | I1I1N3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G17170.1 | 1e-172 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-37 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g17170.4.p |
Entrez Gene | 100837086 |
Publications ? help Back to Top | |||
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