PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17170.1.p
Common NameBRADI_3g17170
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 329aa    MW: 35256 Da    PI: 10.1049
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1494138347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Bradi3g17170.1.p  94 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 138
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96887143IPR017930Myb domain
SuperFamilySSF466891.15E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-1890142IPR006447Myb domain, plants
SMARTSM007171.4E-1191141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1294137IPR009057Homeodomain-like
PfamPF002491.9E-1294138IPR001005SANT/Myb domain
CDDcd001672.58E-1094139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPQDSRPAGM RLFGVTIAPA PDPPDHRDPN PPVPVREDVM RKCKSMGNLA ALASASASGD  60
AGGAAAADGY LSDGGLLQSS GKRRRAQERK KAVPWTEEEH RTFLAGLEKL GKGDWRGIAK  120
NFVTTRTPTQ VASHAQKYFL RQTNPNKKKR RSSLFDMMAS DLSPAPNCPI LPPTMAKLHE  180
MVAMTKQLQN SNLEGVSSSN AANVASQVGR DLPPPVPSFK ATNLDTSLVK TNRMECFSRT  240
HFSFRQIPMI AEGTSSTSIT PTANVTAPAF QANITAFPIP QSDPSPPSPP KADHPEENKD  300
LELTVAPPSQ QTMTNISSQN VVGVIQVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17170.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519470.0JF951947.1 Triticum aestivum clone TaMYB64 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318074.10.0transcription factor MYBS2 isoform X1
SwissprotQ7XC579e-45MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLI1I1N20.0I1I1N2_BRADI; Uncharacterized protein
STRINGBRADI3G17170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Representative plantOGRP1297345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]