PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g17165.1.p | ||||||||
Common Name | BRADI_3g17165, LOC100836777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38024.7 Da PI: 6.3578 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G g+W+ ++++ g+ R++k+c++rw +yl Bradi3g17165.1.p 14 RGLWSPEEDEKLVRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ +++ G++ W+ Ia++++ gRt++++k++w+++ Bradi3g17165.1.p 67 RGRFTPEEEKLIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.1 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.69E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.387 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKHV 120 PAPPASISPT TASPPNSLIA APPCTGSTGT SSVAGGANHR RPLQHPTFSC TADEDEQHHL 180 QLDAFMGPQA QAQQSIVSCG RDEGSPPGGA TMAAAPPPLF MFDTSGPLFA TTPAQEHPFI 240 SSFTAAMAEG GCYGLQLPPL VDGMGAMAMD DHCRYEIVEE QKQQQQRRRP EPELELELEE 300 ERWVDDEQLL MWHDVHDELT TTPSSNLQSD HHSSLLFMGP N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g17165.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU730902 | 0.0 | EU730902.1 Brachypodium distachyon clone BAC DH085B13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755642.1 | 0.0 | myb-related protein Zm38 | ||||
TrEMBL | C3SAD7 | 0.0 | C3SAD7_BRADI; Myb-like DNA-binding domain containing protein | ||||
STRING | BRADI3G17165.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6032 | 37 | 57 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 5e-84 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g17165.1.p |
Entrez Gene | 100836777 |
Publications ? help Back to Top | |||
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