PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16812.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 662aa    MW: 76180.2 Da    PI: 8.6305
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16812.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.77e-1276163190
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       +++n Y+ evGF +r  ksk+        k+    t+++ vC +eg++++++         +++ r+gC+  +++ +++d+ w++++++l Hn
  Bradi3g16812.1.p  76 EYFNLYSWEVGFGIRYGKSKSYkcksgpkKDVVYQTMQEIVCGCEGTPKKKN---------TSSVRCGCRTFIRLLRSEDHGWYIKECRLVHN 159
                       589************8877665556665333334467788888888887755.........559***************************** PP

              FAR1  87 Hela 90 
                       H+l+
  Bradi3g16812.1.p 160 HKLS 163
                       **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-876163IPR004330FAR1 DNA binding domain
PfamPF105513.9E-28286378IPR018289MULE transposase domain
PROSITE profilePS509669.384551587IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
SLEEWSEVGA VSVEESGLSA SSRRKKFDAG PAVRLPVPGR CSPLENALRG FAHRTSENIL  60
LPEIGLCFGS LPEAYEYFNL YSWEVGFGIR YGKSKSYKCK SGPKKDVVYQ TMQEIVCGCE  120
GTPKKKNTSS VRCGCRTFIR LLRSEDHGWY IKECRLVHNH KLSWSNGEKM CWPSHKHIDR  180
YTRELVRNLR ENNVPLTKVY SILGSYFGST EDIPFNKRSL ENLCKQISKE EANDDVRKTI  240
DLFTKMRDED PSFVYTADLD SDGRIRTLIW VNGKSKLDYR YFGDAITFDT TYKTNLYGMP  300
FGLFVGVNNH FQSIIFSGVL MRQETIESFE WIFREFTSLM GGKAPITILT DQCRAMEVAI  360
ERVFTQTTHR WCKWHVLKMA KERLGSVYTK YKFEAAWEEI LEKYDLKEHH FLTPIYESRH  420
RWAKPYFSGV FCAKMTSTQR SESANHMLKG YVPPGAPMHL FVKQYNKLLA DRILKEDSEN  480
QRTRMGGVVL KTGWPIEKHA ATIYTSVMLE MFSEHIFDSA AYNVIEVVPN KKYLTVHSDA  540
SRREKWSKVH YEVTISDDGG QYTCECGLAE HMGMICCHSI RVMLRLGVDK VPQAHILKRW  600
TKDASDVLPD HLAHLQKDRG STRSQSYRHA SLHVAALELA SIGDKNIDCY HDVLKYILDG  660
TK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16812.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317136.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CXL80.0A0A2K2CXL8_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-75FAR1-related sequence 5