PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16515.1.p
Common NameBRADI_3g16515, LOC100838310
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 717aa    MW: 78015.6 Da    PI: 6.4745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16515.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-152468147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  Bradi3g16515.1.p 24 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 68
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-161874IPR009057Homeodomain-like
PROSITE profilePS5129419.1471973IPR017930Myb domain
TIGRFAMsTIGR015571.6E-162271IPR006447Myb domain, plants
SMARTSM007176.5E-122371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-82464IPR009057Homeodomain-like
PfamPF002491.5E-122467IPR001005SANT/Myb domain
CDDcd001671.03E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MEMNSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ  60
IRSHAQKFFT KLEKEAINNG TSPGEAHDID IPPPRPKRKP NCPYPRKGCL SSDAPTREAP  120
NDKSTKSNIS LTSSNAQTAG NATLQKLQGK ESSSCSEVLN LFRDAQSASF SSVNKSSSNH  180
GASMEIEATK TEIKDMTTMD RTSVSIDMEK DVKDINDQEM ERPNRIHISA KYDHLHDDCL  240
DNSRQHVKLK PKSVEITHTD QHPTRASHYQ MDRTGASGIP VIGTEKSPAD QTNDQVGVAK  300
GNMNCLHPTL SVDPKFDNSS TAQPITHNYA AFAPMMQCHC NQDAYKSSVN MSSAFSSMLV  360
STLLSNPAVH AAARLAASYW PSADSPVDPN QESPSDNAQG RHIGSPPSMA SIVAATVAAA  420
SAWWATQGLL PLFAPPMAFP FVPVPSASFP TADVQRASEN FPVDCTPKEC QVAQKQGQPE  480
AVMVVASSQS DESGNGEVSL HTEIKISPTD KAEITPATGA DTSDAFGNKK KQDRSSCGSN  540
TPSSSDVEAE HVPEKQDQVN DKEQQASCNN LSAGDTNHRR FRSIASTSES WKEVSEEGRM  600
AFDALFSRGK LPQSFSPPQA EGSKAVSKEV SKEDQGEAIT VTVDLNECAS IIDRELDTSV  660
GPIASLPIEL SHLNMKSRRT GFKPYKRCSV EAKENRVPAS DEVGTKRIRL DSEAST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16515.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573469.10.0protein CCA1
RefseqXP_010234382.10.0protein CCA1
RefseqXP_010234383.10.0protein CCA1
RefseqXP_010234384.10.0protein CCA1
TrEMBLI1I1F40.0I1I1F4_BRADI; Uncharacterized protein
STRINGBRADI3G16515.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Representative plantOGRP1297144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-40circadian clock associated 1