PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g16500.1.p | ||||||||
Common Name | BRADI_3g16500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 217aa MW: 23827.3 Da PI: 5.1706 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 82.7 | 3.4e-26 | 41 | 142 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae+h + ++ ++l +ed W+++++y+++s++yv+t+GW++Fv++++L +gD++ F+ Bradi3g16500.1.p 41 FDKVVTPSDVGKLNRLVVPKQHAERHfpPMAAAGMTELCFEDAAAgaagrtAAWRFRYSYWGSSQSYVITRGWSRFVREKRLSAGDTISFT-- 131 89*************************9556678889*****6555999999***************************************.. PP SSSEE..EEEEE CS B3 86 grsefelvvkvf 97 rs+++++++ + Bradi3g16500.1.p 132 -RSGGRYFIGYR 142 .57777777766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-32 | 37 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.09E-23 | 39 | 135 | No hit | No description |
SuperFamily | SSF101936 | 1.31E-25 | 39 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.2E-22 | 41 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-16 | 41 | 145 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 41 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MIMEEATAQE RSHEEEEEDD LVDVHYQQGE AVGEGELEHL FDKVVTPSDV GKLNRLVVPK 60 QHAERHFPPM AAAGMTELCF EDAAAGAAGR TAAWRFRYSY WGSSQSYVIT RGWSRFVREK 120 RLSAGDTISF TRSGGRYFIG YRHRQPCRRH DIVFGSDADA GPAQPRLFGR GTSTMICHGE 180 AVAESPPPRS FRLFGVNVEC GTGAGEDDEE GGQGLG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-39 | 38 | 163 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g16500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316233.1 | 1e-159 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 4e-52 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | A0A0Q3Q0Z7 | 1e-158 | A0A0Q3Q0Z7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G16500.1 | 1e-157 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 | Representative plant | OGRP14487 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 5e-39 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g16500.1.p |