PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16480.1.p
Common NameBRADI_3g16480, LOC100838012
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 801aa    MW: 87715.6 Da    PI: 4.3502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.7e-5291421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp GfrFhPtdeelv +yLk k++g+ + + evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ 
  Bradi3g16480.1.p   9 LPLGFRFHPTDEELVRHYLKGKITGQINAEVEVIPEIDVCKCEPWDLPdKsLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRI 101
                       699***********************988889***************96446677888*********************************** PP

               NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  Bradi3g16480.1.p 102 IKSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                       ***976555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-583163IPR003441NAC domain
PROSITE profilePS5100557.0289163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MTVMELKTLP LGFRFHPTDE ELVRHYLKGK ITGQINAEVE VIPEIDVCKC EPWDLPDKSL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR IIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQVEKSER SSPDEMDRSG  180
YSPTPSRSTP DNMEANEEAI TLLNKESPES GVQGCPIDLP GTVETPAAPI TRWLADRTDN  240
LVTHDANILR TPFHGHVDEI PKTGPLVQPI DPQKKNVDSE EFLTFAAPML PHEGNDLFCN  300
PSLQGHSFDF GGSMAPGDLV EKFLNEAIAD PEEHSSTASK VQYDSDNGIM LPELENNWPM  360
QGEMLDDPYW FENINFCPDD TTPQLSGYEN TPLLPFIGAN PDELSMDSDH ESMQDLFNTM  420
EDSNEKMGGW NNGFGFNPIH QQLQSTMHPN HLVSQQGCAQ RRLRLQDSLS AVNIEGEESM  480
TKDEDEVSHI VTSEYMGESV ESTADGDDGD STGVTIMSRH PAPSTNEPSD GDDGDSTGVT  540
IMSRRPAPTT NEPSDGDDGD STGVTIMSRC PAPSTNEPSD GDDGDSTGVS IISRRPAPST  600
DEPSDGDDAE STGVLIMSRG PALSSDVPSD RDVAESAGIT VLSQCPALSS SSDSSITQQG  660
TAGRRLRLQL NLNAGPCSSI DGSSSCMIDE KENEHKGMRA ENEGNMDTSF CDDANFVGNN  720
HADEQDNIPE HDAARPVPEA NSVTRLRKTA EKSGNENKQE LGVHPHVRAP RKGGFPAYII  780
WPVLSVALLV LVSVGIYGLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-46816419169NAC domain-containing protein 19
3swm_B1e-46816419169NAC domain-containing protein 19
3swm_C1e-46816419169NAC domain-containing protein 19
3swm_D1e-46816419169NAC domain-containing protein 19
3swp_A1e-46816419169NAC domain-containing protein 19
3swp_B1e-46816419169NAC domain-containing protein 19
3swp_C1e-46816419169NAC domain-containing protein 19
3swp_D1e-46816419169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2497490.0AK249749.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234378.10.0NAC domain-containing protein 14
TrEMBLI1I1F00.0I1I1F0_BRADI; Uncharacterized protein
STRINGBRADI3G16480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Representative plantOGRP1297045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-70NAC 014