PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16420.1.p
Common NameBRADI_3g16420, LOC100836880
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 323aa    MW: 33763.6 Da    PI: 6.5423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07167208240
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       g WT +E ell +   +++ g   +W++Ia+ +g +Rt++++
  Bradi3g16420.1.p 167 GEWTDQEMELLRRQMVKHPAGepqRWEKIAAVFGGRRTPESV 208
                       78********************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.11161208IPR017877Myb-like domain
SMARTSM007170.017165218IPR001005SANT/Myb domain
PfamPF002498.3E-6167209IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-7167210IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-4167202IPR009057Homeodomain-like
CDDcd001678.87E-6168210No hitNo description
SMARTSM007171.0E-4258310IPR001005SANT/Myb domain
SuperFamilySSF466894.04E-9259308IPR009057Homeodomain-like
PROSITE profilePS500906.609260308IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-4261317IPR009057Homeodomain-like
CDDcd001670.00507268308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEFIDDEWDS QPRARVIHSR AAPNANSSPA TADHASRSLP HTAACAAAAV LLLAAAYSLD  60
AAYQVFSSIL IWIAASLLLA PFAPSSATGG DISVGRGSPL PEQEPAEEPS PDPTPATRRG  120
RRQNTTPAPA KPSDPIDPPV QQRPPRKEAT GGSTGAVGGG EKEEDVGEWT DQEMELLRRQ  180
MVKHPAGEPQ RWEKIAAVFG GRRTPESVIR AAKSGGAAAA AAGGSFEQFL RKRKPLDPRA  240
EAAEADEGGS AGGGDGGGDG GWSAGDDRAL LNALKEFPKD TAMRWEKVAA AVPGKTKAGC  300
MKRVTELKRD FRSSKTSSDI AQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573464.10.0transcription factor MAMYB
TrEMBLI1I1E40.0I1I1E4_BRADI; Uncharacterized protein
STRINGBRADI3G16420.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Representative plantOGRP81421212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-44MYB_related family protein