PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g16400.4.p | ||||||||
Common Name | BRADI_3g16400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LSD | ||||||||
Protein Properties | Length: 115aa MW: 12495.4 Da PI: 8.3514 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.3 | 3.3e-15 | 37 | 61 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Bradi3g16400.4.p 37 CGGCHTLLMYIRGATSVQCSCCHTV 61 ************************9 PP | |||||||
2 | zf-LSD1 | 38.9 | 1.4e-12 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V Bradi3g16400.4.p 75 CGNCRMLLMYQYGARSVKCAVCSFV 99 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 5.7E-15 | 34 | 63 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.9E-13 | 37 | 61 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-11 | 72 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.8E-12 | 75 | 99 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MLRSLQYRDR CAGSRYAYES NSFCPSRIWT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT 60 VNLAMEANQV AHVNCGNCRM LLMYQYGARS VKCAVCSFVT SVGATPGADQ KSSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g16400.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091666 | 1e-92 | FP091666.1 Phyllostachys edulis cDNA clone: bphyst007l18, full insert sequence. | |||
GenBank | FP094210 | 1e-92 | FP094210.1 Phyllostachys edulis cDNA clone: bphylf003c20, full insert sequence. | |||
GenBank | FP095799 | 1e-92 | FP095799.1 Phyllostachys edulis cDNA clone: bphyst008n09, full insert sequence. | |||
GenBank | FP097106 | 1e-92 | FP097106.1 Phyllostachys edulis cDNA clone: bphyst016n22, full insert sequence. | |||
GenBank | FP097837 | 1e-92 | FP097837.1 Phyllostachys edulis cDNA clone: bphylf033i22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318071.1 | 2e-57 | protein LSD1 isoform X2 | ||||
Swissprot | Q0J7V9 | 2e-53 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A0Q3LS35 | 5e-79 | A0A0Q3LS35_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G16400.1 | 9e-56 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-49 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g16400.4.p |
Publications ? help Back to Top | |||
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