PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g16400.3.p | ||||||||
Common Name | BRADI_3g16400, LOC100835743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LSD | ||||||||
Protein Properties | Length: 147aa MW: 15021.5 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.1 | 3.4e-14 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV Bradi3g16400.3.p 30 CSGCRNLLMYPAGATSVCCAVCSTV 54 ***********************99 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.9e-15 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Bradi3g16400.3.p 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP | |||||||
3 | zf-LSD1 | 38.4 | 2.1e-12 | 107 | 131 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V Bradi3g16400.3.p 107 CGNCRMLLMYQYGARSVKCAVCSFV 131 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 8.4E-4 | 25 | 128 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.0E-13 | 27 | 57 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-11 | 30 | 54 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.8E-15 | 66 | 95 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 69 | 93 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.2E-11 | 104 | 133 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.1E-12 | 107 | 131 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPVPLAPYPT PPAPFTPPTP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCAVCSF VTSVGATPGA DQKSSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g16400.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249258 | 1e-163 | AK249258.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf27e22, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573460.1 | 1e-101 | protein LSD1 isoform X1 | ||||
Refseq | XP_010234376.1 | 1e-101 | protein LSD1 isoform X1 | ||||
Swissprot | Q0J7V9 | 1e-82 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | I1I1E2 | 1e-100 | I1I1E2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G16400.1 | 1e-100 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 4e-60 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g16400.3.p |
Entrez Gene | 100835743 |
Publications ? help Back to Top | |||
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