PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g16400.1.p
Common NameBRADI_3g16400, LOC100835743
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 147aa    MW: 15021.5 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g16400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.13.4e-143054125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr+lL+YP+GA+sV+Ca+C tV
  Bradi3g16400.1.p 30 CSGCRNLLMYPAGATSVCCAVCSTV 54
                      ***********************99 PP
2zf-LSD146.84.9e-156993125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggC+tlL+Y rGA+sV+C++C+tV
  Bradi3g16400.1.p 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                      ************************9 PP
3zf-LSD138.42.1e-12107131125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+Cr lL+Y +GA+sV+Ca+C +V
  Bradi3g16400.1.p 107 CGNCRMLLMYQYGARSVKCAVCSFV 131
                       **********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.108.4E-425128No hitNo description
TIGRFAMsTIGR010531.0E-132757IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-113054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.8E-156695IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-11104133IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPFTPPTP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCSF VTSVGATPGA DQKSSN*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g16400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492581e-163AK249258.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf27e22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573460.11e-101protein LSD1 isoform X1
RefseqXP_010234376.11e-101protein LSD1 isoform X1
SwissprotQ0J7V91e-82LSD1_ORYSJ; Protein LSD1
TrEMBLI1I1E21e-100I1I1E2_BRADI; Uncharacterized protein
STRINGBRADI3G16400.11e-100(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-60lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]