PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g16121.2.p

Common Name

BRADI_3g16121

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 910aa MW: 103517 Da PI: 7.5034

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g16121.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.2e-26	98	186	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl++eHnHe+ Bradi3g16121.2.p 98 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVeGKKTRKRPASIREGCNAMLEVLRRGDNKWVVTKLVKEHNHEV 186 9************************************9998776356677777899***************************96 PP
2	FAR1	57	6.2e-18	220	310	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraet..rtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA +vGF+ r+++s+ks ++++ ++ ++vCs++ +++ +++++e+++r +a + r gC+a +++ ++++++w+v+kl eH+Hel+p Bradi3g16121.2.p 220 FYYSYAIRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRETNAEDAKRGQALDplRDGCEALFEIIRKQQDVWMVSKLIIEHTHELNP 310 9*****************9.6777***********99999777777665543399**************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-24	98	186	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.5E-16	220	310	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-18	411	501	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	678	726	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.7E-7	678	723	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	701	728	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:3.40.850.10	8.4E-5	831	881	IPR001752	Kinesin motor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007018	Biological Process	microtubule-based movement
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding
GO:0008017	Molecular Function	microtubule binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MEVEGQGMME PQGVELEDDS INFWASLGVS TTHVHGVDQM PALHNVQMVD HHVQLLPAAT 60 TVSHPQSVCK ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC 120 SESIIMLRFV CSKEGFSKEK RVVEGKKTRK RPASIREGCN AMLEVLRRGD NKWVVTKLVK 180 EHNHEVGMPS TVHYIATESD TVVDPYIGME FESLESAKTF YYSYAIRVGF EARVRQSRKS 240 QDESLKMLKL VCSRHRYHSG RETNAEDAKR GQALDPLRDG CEALFEIIRK QQDVWMVSKL 300 IIEHTHELNP APPSRVCCVR SQGEILVIAK NFADTRNLLL NGQDSQPSRE IRYNDLGPED 360 AQSLLEYLRK VQVEDPAFFY AVQLDKNEQT VNIFWADANA RMAYYHFGDA VRFETAYRNS 420 KEHIPIVIFS GVNHHVQPVV FGCALLVDES EKSFAWLFEK WLEAMHVRPP VSFVTELNQQ 480 MAAAAAKVLP DTCHIFCEKH IFGTVKEELH NIYPELDHFI TDLRKCIDEC RIEESFESCW 540 DSVLIKHGFR NNEVLRSLYD IRQQWAPAYT KKSFHAANLL PQSSENFEKI IDKYFSSKTQ 600 LQVSVQQLGK AICSFYEKEA QADYLTMVQV PALRTASPME KQASLIFTRT VFDIFQEQFA 660 ESFGYHAERL EDGMVHRYRV TVDDGDEESH TVTFSPDQST VCCSCCLFES CGILCRHALR 720 VFIIEGVRFL PKAYVLKRWT KHAKSTVTLD NYTDLRGYSE DPSTSRYNDL CYDAIKCAKE 780 GSASSELYKI AKDALHKALD EVMSLRNTRQ QNLPNRTTSL KSPVKKFGKA KDTSAKSLKR 840 IRTMKIILVA LAGSEKAWKN GAEGQVCFEV KTIKKNTNAL KAPNYCLQAN QITCLTTYRS 900 LTYFSRCTG*

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MEVEGQGMME PQGVELEDDS INFWASLGVS TTHVHGVDQM PALHNVQMVD HHVQLLPAAT  60
TVSHPQSVCK ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC  120
SESIIMLRFV CSKEGFSKEK RVVEGKKTRK RPASIREGCN AMLEVLRRGD NKWVVTKLVK  180
EHNHEVGMPS TVHYIATESD TVVDPYIGME FESLESAKTF YYSYAIRVGF EARVRQSRKS  240
QDESLKMLKL VCSRHRYHSG RETNAEDAKR GQALDPLRDG CEALFEIIRK QQDVWMVSKL  300
IIEHTHELNP APPSRVCCVR SQGEILVIAK NFADTRNLLL NGQDSQPSRE IRYNDLGPED  360
AQSLLEYLRK VQVEDPAFFY AVQLDKNEQT VNIFWADANA RMAYYHFGDA VRFETAYRNS  420
KEHIPIVIFS GVNHHVQPVV FGCALLVDES EKSFAWLFEK WLEAMHVRPP VSFVTELNQQ  480
MAAAAAKVLP DTCHIFCEKH IFGTVKEELH NIYPELDHFI TDLRKCIDEC RIEESFESCW  540
DSVLIKHGFR NNEVLRSLYD IRQQWAPAYT KKSFHAANLL PQSSENFEKI IDKYFSSKTQ  600
LQVSVQQLGK AICSFYEKEA QADYLTMVQV PALRTASPME KQASLIFTRT VFDIFQEQFA  660
ESFGYHAERL EDGMVHRYRV TVDDGDEESH TVTFSPDQST VCCSCCLFES CGILCRHALR  720
VFIIEGVRFL PKAYVLKRWT KHAKSTVTLD NYTDLRGYSE DPSTSRYNDL CYDAIKCAKE  780
GSASSELYKI AKDALHKALD EVMSLRNTRQ QNLPNRTTSL KSPVKKFGKA KDTSAKSLKR  840
IRTMKIILVA LAGSEKAWKN GAEGQVCFEV KTIKKNTNAL KAPNYCLQAN QITCLTTYRS  900
LTYFSRCTG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g16121.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252774	0.0	AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024316747.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A0Q3FAJ8	0.0	A0A0Q3FAJ8_BRADI; Uncharacterized protein
STRING	Traes_5BL_CCDB985ED.2	0.0	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-126	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi3g16121.2.p