PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g15880.2.p
Common NameBRADI_3g15880, LOC100839615
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 285aa    MW: 30920 Da    PI: 5.2801
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g15880.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.5e-1189145155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++ k++g+++A+++d  s+  g krk  + g++ t+e Aa+a++ a++k++g
  Bradi3g15880.2.p  89 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 145
                       79*******************55558777778888.999999*************987 PP
2AP2483.2e-15190243155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++k +g+W A+I    e +    k ++lg+f t+ eAa+a++ a+ +l+g
  Bradi3g15880.2.p 190 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIELRG 243
                       67*****999.9******99953323..36**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-889145IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-1189155IPR016177DNA-binding domain
SMARTSM003804.9E-1390161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-1090155IPR001471AP2/ERF domain
PROSITE profilePS5103215.88390155IPR001471AP2/ERF domain
CDDcd000186.85E-21190253No hitNo description
PfamPF008471.0E-10190243IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17190253IPR016177DNA-binding domain
SMARTSM003801.3E-27191257IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-19191251IPR001471AP2/ERF domain
PROSITE profilePS5103218.465191251IPR001471AP2/ERF domain
PRINTSPR003674.5E-8192203IPR001471AP2/ERF domain
PRINTSPR003674.5E-8233253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MASPAVHPNS PDPTATPPPP PPSQENPPAS ADASEPATAT EAAGGGGEIA ALEEQLAVTV  60
DGGEETKASP SGGKLVADTM RKYAAPRSSR YHGVTRLKWS GKFEAHLWDN TSQVEGRKRK  120
GKHGSYVTEE NAARAHDLAA LKYWGVSQHT KLNFTISDYE KEIEIMKSMN QDEFVAYIRR  180
QSSCFSRGTS SYRGVTRRKD GKWQARIGRI GESRDTKDIY LGTFETEVEA AEAYDLAAIE  240
LRGVHAVTNF DISNYSEEGL KKLEGSSEET NLEGQPEVTE LAGQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g15880.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2498560.0AK249856.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf50e04, mRNA sequence.
GenBankDQ2865700.0DQ286570.1 Triticum aestivum aintegumenta-like protein (ANTL1B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234345.10.0AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z024e-65CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2K2CXE70.0A0A2K2CXE7_BRADI; Uncharacterized protein
STRINGBRADI3G15880.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.16e-67AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]