PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g15880.1.p | ||||||||
Common Name | BRADI_3g15880, LOC100839615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 288aa MW: 31295.5 Da PI: 5.2801 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.7 | 3.3e-14 | 89 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g ++ k+++lg++ t+e Aa+a++ a++k++g Bradi3g15880.1.p 89 SRYHGVTRLKWSGKFEAHLWDnTSQvEGrkRKgKHVYLGSYVTEENAARAHDLAALKYWG 148 79*******************666696675336************************987 PP | |||||||
2 | AP2 | 48 | 3.2e-15 | 193 | 246 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e + k ++lg+f t+ eAa+a++ a+ +l+g Bradi3g15880.1.p 193 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIELRG 246 67*****999.9******99953323..36**********99*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.05E-13 | 89 | 158 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.68E-14 | 89 | 160 | No hit | No description |
Pfam | PF00847 | 7.8E-12 | 89 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-13 | 90 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.411 | 90 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-19 | 90 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 193 | 256 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.52E-21 | 193 | 256 | No hit | No description |
Pfam | PF00847 | 1.0E-10 | 193 | 246 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-19 | 194 | 254 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.465 | 194 | 254 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-27 | 194 | 260 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 195 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-8 | 236 | 256 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MASPAVHPNS PDPTATPPPP PPSQENPPAS ADASEPATAT EAAGGGGEIA ALEEQLAVTV 60 DGGEETKASP SGGKLVADTM RKYAAPRSSR YHGVTRLKWS GKFEAHLWDN TSQVEGRKRK 120 GKHVYLGSYV TEENAARAHD LAALKYWGVS QHTKLNFTIS DYEKEIEIMK SMNQDEFVAY 180 IRRQSSCFSR GTSSYRGVTR RKDGKWQARI GRIGESRDTK DIYLGTFETE VEAAEAYDLA 240 AIELRGVHAV TNFDISNYSE EGLKKLEGSS EETNLEGQPE VTELAGQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g15880.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249856 | 0.0 | AK249856.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf50e04, mRNA sequence. | |||
GenBank | DQ286570 | 0.0 | DQ286570.1 Triticum aestivum aintegumenta-like protein (ANTL1B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234345.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 9e-70 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | I1I177 | 0.0 | I1I177_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G15880.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 | Representative plant | OGRP16063 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 2e-71 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g15880.1.p |
Entrez Gene | 100839615 |