PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g15327.3.p
Common NameBRADI_3g15327
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 792aa    MW: 84377.1 Da    PI: 5.9876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g15327.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-2198154157
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Bradi3g15327.3.p  98 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 154
                       688999************************************************995 PP
2START200.85.6e-633025221206
                       HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
             START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdet 75 
                       ela +a++el+++a ++ep+W++s+      e         ++e ++v             + ea+r   vv+m++a lve+l+d++ q+ + 
  Bradi3g15327.3.p 302 ELAVAAMDELLQMARVDEPLWSSSAtgeaalE---------EEEYGRVygarglgprqygLKPEASRGANVVIMTHASLVEILMDVN-QFATV 384
                       57899********************6644443.........443333344444667788999*************************.88888 PP

                       -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
             START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                       +     +a+t+ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p     v+++++pSg+li+++
  Bradi3g15327.3.p 385 FSsivsRASTHEVLSTGvagnydGALQVMSMEFQVPSPLVPtRESYFVRYCKHNPEGSWAVVDVSLDSLRPSPA----VKCRRRPSGCLIQEL 473
                       888888*****************************************************************995....*************** PP

                       CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       +ng+skvtwvehv++++r++h ++++lv+sgla+gak+wv tl+rqce+
  Bradi3g15327.3.p 474 PNGYSKVTWVEHVEVDDRSVHDIYKPLVNSGLAFGAKRWVGTLGRQCER 522
                       ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2480153IPR009057Homeodomain-like
SuperFamilySSF466891.92E-2086155IPR009057Homeodomain-like
PROSITE profilePS5007117.60595155IPR001356Homeobox domain
SMARTSM003892.5E-2096159IPR001356Homeobox domain
CDDcd000864.26E-2098156No hitNo description
PfamPF000461.6E-1898153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084840.065293525IPR002913START domain
SuperFamilySSF559611.92E-33295524No hitNo description
CDDcd088751.40E-111297521No hitNo description
SMARTSM002341.7E-59302522IPR002913START domain
PfamPF018527.2E-53303522IPR002913START domain
Gene3DG3DSA:3.30.530.204.6E-6369516IPR023393START-like domain
SuperFamilySSF559617.56E-25544779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MTPARRLPPM IGRNGVAYGS PSALSLSQIP ATMSTPGAVV NHMHNLHGMP APDELESKSC  60
SENNGADADA DGTGGGGGSG GEEGEGEEQD PNQRPRKKKR YHRHTQHQIQ ELEAFFKECP  120
HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHEKQE NSQLRAENDK LRAENMRYKE  180
ALSSASCPSC GGPAALGEMS FDEHHLRVDN ARLRDEIDRI SAIAAKHVAA TGKPMPFPMP  240
MAGLSSSAAS FHGLSPAVAA RSPLDLVGAY GGGGDMFGGG AGAGDLMRSH GLGDVDKPLI  300
VELAVAAMDE LLQMARVDEP LWSSSATGEA ALEEEEYGRV YGARGLGPRQ YGLKPEASRG  360
ANVVIMTHAS LVEILMDVNQ FATVFSSIVS RASTHEVLST GVAGNYDGAL QVMSMEFQVP  420
SPLVPTRESY FVRYCKHNPE GSWAVVDVSL DSLRPSPAVK CRRRPSGCLI QELPNGYSKV  480
TWVEHVEVDD RSVHDIYKPL VNSGLAFGAK RWVGTLGRQC ERLASAMASS IPNGDLGVIT  540
SVEGRKSMLK LAERMVASFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV  600
LNAATSFWLP VSPNTVFDFL RDETSRSEWD ILSNGGIVQE MAHIANGRDH GNCVSLLRVN  660
SANSNQSNML ILQESCTDES GSSYVVYAPV DIVAMNVVLN GGDPDYVALL PSGFAILPDG  720
PSAPLSGINE EGGVAAGKGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IACTVERIKA  780
AVCRGGSSNP Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g15327.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573403.10.0homeobox-leucine zipper protein ROC1
RefseqXP_010234329.10.0homeobox-leucine zipper protein ROC1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0Q3Q0F70.0A0A0Q3Q0F7_BRADI; Uncharacterized protein
STRINGBRADI3G15327.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]