PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g15084.2.p | ||||||||
Common Name | BRADI_3g15084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19326 Da PI: 10.8418 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 28 | 77 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +gr++AeIrd + ng +r++lg+fgtae Aa a+++a+++ +g Bradi3g15084.2.p 28 FIGVRARP-WGRYAAEIRDSTRNG--ARVWLGTFGTAEAAAMAYDQAALSSRG 77 57******.**********44465..**********************98665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.244 | 27 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-26 | 27 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 28 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-12 | 28 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-8 | 28 | 39 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-26 | 28 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-12 | 28 | 85 | No hit | No description |
PRINTS | PR00367 | 5.1E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MYSSSSSSSS DSSFPSELSS RIKPAMAFIG VRARPWGRYA AEIRDSTRNG ARVWLGTFGT 60 AEAAAMAYDQ AALSSRGAAT PLNFPLARVQ DSLRVLALGA GAGSGSPVLA LKQRHSRRTR 120 RKKADILSAV SGRKKKKSNC NNMAAAGKNG EQKRFILELE DLGTEYLEEL LRISEQLIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-22 | 28 | 85 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 136 | RKKADILSAVSGRKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g15084.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571392.2 | 1e-127 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A2K2CX69 | 1e-126 | A0A2K2CX69_BRADI; Uncharacterized protein | ||||
STRING | EMT24342 | 5e-47 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-24 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g15084.2.p |