PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g14892.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 660aa    MW: 76053.6 Da    PI: 6.4448
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g14892.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1613.6e-19253365291
              FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk......................tekerrtraetrtgCkaklkvkk 70 
                       fYn+YA+ vGFs +++ ++++  +  + +t++t++C++ gk  +++                         +k r++++ + t+C+a+++v++
  Bradi3g14892.1.p 253 FYNTYASIVGFSAKIAGNYHRrgTAADAVTRYTYRCNRAGKVVSREVLeerkrkrdqnrktkdglacpvqLNKPRNKNSIDVTDCHATMVVTL 345
                       9**************9999985667789************9877765567788999************99899999***************** PP

              FAR1  71 ekdgkwevtkleleHnHelap 91 
                       +  +kw vtk+eleHnH l+p
  Bradi3g14892.1.p 346 K-GDKWIVTKIELEHNHVLSP 365
                       *.9**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.9E-18253365IPR004330FAR1 DNA binding domain
PfamPF105511.6E-33485579IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAEEHDTYQG IMDSYGDFLL GPSRYPGFQQ VTRQTIHLAD APPCVESSDS IRCAEGMVVA  60
GQEAVDPYMP TQISDDSVQN LLGHHVAREQ PACGSFTEMP QDSFYPRYEH ILHEPMGSEN  120
KTFMITGRDG RGSYPEEPDD GQCNDQDPAL SDDDACVSED ENAETYHVSV DSENLSTAID  180
KTAQTGNGQT HRFDKQAHAE HTIEVEQLSK EDIENYLQNE TLISSQSCSQ EIRAQHVPRI  240
DMSFCSHVEA FAFYNTYASI VGFSAKIAGN YHRRGTAADA VTRYTYRCNR AGKVVSREVL  300
EERKRKRDQN RKTKDGLACP VQLNKPRNKN SIDVTDCHAT MVVTLKGDKW IVTKIELEHN  360
HVLSPPGEAK FLRSHKHMTD EEKLLIRTMN AVKLPSRKIM AILAGFRGGI SALPYTKKDI  420
NNYRTAIRNE SNQNDMMMVI DFFKKKQMED PRFYYAFRID DENKVQNIFW ADGHCRRFYH  480
LYGDCVSFDT TYKTNKYNLP FAPFVGITGH GDNCLFACAI LQNETIETFT WLFEEFLQCM  540
RGKMPLTIIT DQDVAMKQAI PRVFTQTTHR NCLFHIKKKA EEKCARCFAT KRTLHVEFND  600
IINRSQTEEE FETLWQAMIQ KYRFENVKYF QHMWEIRKNF VPVYFKKDFF SLHTFYSQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g14892.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317768.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2CX720.0A0A2K2CX72_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-76FAR1-related sequence 5