PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g14240.1.p
Common NameBRADI_3g14240, LOC100823491
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SRS
Protein Properties Length: 376aa    MW: 41140.1 Da    PI: 7.674
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g14240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70223.21.9e-075993539
            DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39
                      + +C +CGn a+  C ++ C+ CC      C+ hv
  Bradi3g14240.1.p 59 KPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHV 93
                      568*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-46194IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAASSPASSG KAASDTSAPA PAPASAPAPT VANGNGTPQK PPPGTGFDMP KPNLRGLNKP  60
KCIQCGNVAR SRCPFQCCKS CCYKAQNPCH IHVLKQSNTL PEKTPPTPAP LSDQPSTNSP  120
LNGSSSRLSS LQKLPHHFLN SIRTRKSLAK KDVASINKWR FMKLEEHIQG DIDVENEAYD  180
RYTQNIGLLE ETFYLTEDAA GEHETEATSS EERMEIMVSE AKVRLKSDCS NADGFKERIA  240
TILDQKLKEL QGRGSAYEDD KPSDQNLDDH RKPVKLSIKQ QMERNMKTNE LLGKLTKAQS  300
EDDLRPCLGI MAQLFGKEKS STSMSTSNKS SNQESTPAIT PSYSFPRRMT RSEFDENMSS  360
EINDESSSLS QVAQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g14240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573337.10.0uncharacterized protein LOC100823491
TrEMBLI1I0N80.0I1I0N8_BRADI; Uncharacterized protein
STRINGBRADI3G14240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP737555
Representative plantOGRP597255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.11e-61