PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g13300.1.p
Common NameBRADI_3g13300, LOC100840431
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 292aa    MW: 31439.1 Da    PI: 6.9272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g13300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-09160200954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Bradi3g13300.1.p 160 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 200
                       699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-7161200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.09E-7174205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDNMSTHHQN SSSSASSWDL DMSLGTHHHP LLFDHHPSAA AAPPPQPQQP LIPFHLHHHH  60
HLADPSPSSS SPHFFHGLEF HHQQEEIQMR PPPPPLQQEQ QQGAAEEALT AAEAEEELGA  120
MKEMMYRIAA MQPVDIDPAT IKKPRRRNVR ISEDPQSVAA RHRRERISER IRILQRLVPG  180
GTKMDTASML DEAIRYIKFL KRQVQDLQSP PAPGTTTTTA AAAYHGSGSG AGPSRPPAAF  240
LAGPMVDWAA GLTAARGEVH GPSSESTSSS SMGGALGFGF SGGGQSSHGM H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g13300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0650181e-107BT065018.1 Zea mays full-length cDNA clone ZM_BFc0135I21 mRNA, complete cds.
GenBankEU9741971e-107EU974197.1 Zea mays clone 442660 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236398.10.0transcription factor HEC3
TrEMBLI1I0C60.0I1I0C6_BRADI; Uncharacterized protein
STRINGBRADI3G13300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.14e-36bHLH family protein