PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g12680.1.p | ||||||||
Common Name | BRADI_3g12680, LOC100831856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22859.3 Da PI: 8.5588 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++ a+k+l+g Bradi3g12680.1.p 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALDAARAYDSAAKALYG 89 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.547 | 40 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-31 | 40 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-28 | 41 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.34E-24 | 41 | 97 | No hit | No description |
Pfam | PF00847 | 2.8E-12 | 41 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-19 | 41 | 96 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAERAASRGR QGNSRKCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG KWVAEIREPN 60 RGARLWLGTF STALDAARAY DSAAKALYGD CARLNLAGGT NNPVLAPPAT AAATSSETQS 120 YSSNSSSGAN SDYYYYYNEY LNGNNGGGAW ISSAAPPAVE DEDFDTYVRR LPKAEDFGLQ 180 AFLQNMPFDV LAEASGTAAG AGIWEPSCDM AAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 41 | 96 | 6 | 62 | ATERF1 |
3gcc_A | 3e-14 | 41 | 96 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g12680.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 2e-89 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 2e-89 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 2e-89 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 2e-89 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 2e-89 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 2e-89 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571275.1 | 1e-155 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 2e-72 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | I1I048 | 1e-154 | I1I048_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G12680.1 | 1e-155 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 4e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g12680.1.p |
Entrez Gene | 100831856 |
Publications ? help Back to Top | |||
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