PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g12490.1.p
Common NameBRADI_3g12490, LOC100828501
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 388aa    MW: 40632.7 Da    PI: 8.1521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g12490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07204226123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk F+r  nL+ H+r H
  Bradi3g12490.1.p 204 HYCKVCGKGFKRDANLRMHMRAH 226
                       68*******************99 PP
2zf-C2H2110.0013295318123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y C+ Cg k Fs  s+L++H + +
  Bradi3g12490.1.p 295 YACSRCGrKQFSVLSDLRTHEKHC 318
                       89******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.14E-6203227No hitNo description
PROSITE profilePS5015712.217204231IPR007087Zinc finger, C2H2
SMARTSM003550.0029204226IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-6204226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SMARTSM00355160257290IPR015880Zinc finger, C2H2-like
SMARTSM0035522295317IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFSAGDDSGA SPYFQQLFDH GDLGGADGIG AFAGGGDAQC QALLYNLSVL REKVRLLHPL  60
VGLAVHGRGG VAVAADAGAV VQEIVAAASS MMYAFQHLCA VSDAAMQAQD SVAAAAGRAA  120
SNNAAGMAAA AAGCSDQQLQ ALEEDHEAAT MQQWAHGGFY DDDGTSGSKP SAATAQQEAP  180
APAPGTKTRI IELDAAELLA KYTHYCKVCG KGFKRDANLR MHMRAHGDQY KSKAALSAVV  240
SSSGASSSPA AMAASKYSCP QEGCRWNVRH ARFTPLKSVI CAKNHYRRSH CPKMYACSRC  300
GRKQFSVLSD LRTHEKHCGD RRWLCSCGTT FSRKDKLAGH VSLFAGHHPV VVGEGARQCK  360
IDRSSLANSD QLLGNCTTSA GDGFSIT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g12490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632909e-81AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045879e-81AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055449e-81AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149649e-81AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126169e-81CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571264.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLI1I0180.0I1I018_BRADI; Uncharacterized protein
STRINGBRADI3G12490.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-76C2H2 family protein