PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g12480.2.p

Common Name

BRADI_3g12480

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 320aa MW: 34543 Da PI: 7.67

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g12480.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	253	276	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k+Fs s+L++H + + Bradi3g12480.2.p 253 YVCNRCGrKHFSVLSDLRTHEKHC 276 9*******************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSPVMDNYEQ LDVELEKVQL LHPLVGLVVH SRGDVDPVVV ADAGAIVQEI VASSSSMMYA 60 FQHLCGAAGA ATTSAPMQLC RCRTAGCSDH QLQAMEDHEA DMMQQQHSGF YDDDGTFGKP 120 PAVAVAVAQQ EAATDVVQQE AASPGSGTST TATTIIELDA AELLAKYTDY CQVCGKGFKR 180 EANSRAHGDQ YKSKAALASP LSMPSSSPAS NSSKFSCPQE GCRRNMRHVR FTPLSSVICA 240 KNHYKRSHCP KMYVCNRCGR KHFSVLSDLR THEKHCGHSR WLCSCGTTFS RKDKLAGHVS 300 TFAGHHSVAA AARDQRTIY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g12480.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024316218.1	0.0	LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBL	A0A2K2CWR1	0.0	A0A2K2CWR1_BRADI; Uncharacterized protein
STRING	BRADI3G12480.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7441	32	51
Representative plant	OGRP830	16	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	3e-64	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi3g12480.2.p