PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g11846.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 397aa    MW: 46402 Da    PI: 9.376
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g11846.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.92.9e-1726106189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fYn+YA+++GF +rk ++  +       ++ ++Cs++g+++   ++ +++ r ++++rtgC a+l++k+++dg+  ++++  +HnH+l
  Bradi3g11846.2.p  26 SFYNRYARHAGFGLRKGQNDGR-------RSYLYCSRQGRHKFGGHE-TERIRDKTTKRTGCLARLRLKLRNDGTCFIADVTYDHNHQL 106
                       5****************87766.......7889**********9999.8999999********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1326106IPR004330FAR1 DNA binding domain
PfamPF105516.5E-28229322IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQRPDLPDYL LPKINMQFNT TDEAFSFYNR YARHAGFGLR KGQNDGRRSY LYCSRQGRHK  60
FGGHETERIR DKTTKRTGCL ARLRLKLRND GTCFIADVTY DHNHQLDLSA PMVVFLRSHK  120
NFDPHEMQLV EQLKKSNAPH GSIMSFLASM HGGHHNLPHN SRDIHNRKED NVWKATEHDL  180
FRLLAFFHEM KSVNKNFFYE IKIDEIESIS HIFRANASSR GAYEDFNDCV TFDTTYKTNK  240
FRMPLGVFVG VNNHLQSTIF AIALLRDETI ESFQWVFSTF LRCINGKHPI CILTDQCPSM  300
AEAIPTVLPD TLHKLRRWHV VKKYRDDLVK IYAQQPAFKD KLHSILNWPL MPTEFEDAWA  360
GLMNKYSLQE DEKHWRSYTV NRPGGFQLIS RMFPVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g11846.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317122.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2CWQ20.0A0A2K2CWQ2_BRADI; Uncharacterized protein
STRINGBRADI3G11810.11e-161(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-60FAR1-related sequence 5