PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g11846.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 405aa MW: 47283.9 Da PI: 8.6954 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.8 | 3e-17 | 26 | 106 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF +rk ++ + ++ ++Cs++g+++ ++ +++ r ++++rtgC a+l++k+++dg+ ++++ +HnH+l Bradi3g11846.1.p 26 SFYNRYARHAGFGLRKGQNDGR-------RSYLYCSRQGRHKFGGHE-TERIRDKTTKRTGCLARLRLKLRNDGTCFIADVTYDHNHQL 106 5****************87766.......7889**********9999.8999999********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-13 | 26 | 106 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.7E-28 | 229 | 322 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MQRPDLPDYL LPKINMQFNT TDEAFSFYNR YARHAGFGLR KGQNDGRRSY LYCSRQGRHK 60 FGGHETERIR DKTTKRTGCL ARLRLKLRND GTCFIADVTY DHNHQLDLSA PMVVFLRSHK 120 NFDPHEMQLV EQLKKSNAPH GSIMSFLASM HGGHHNLPHN SRDIHNRKED NVWKATEHDL 180 FRLLAFFHEM KSVNKNFFYE IKIDEIESIS HIFRANASSR GAYEDFNDCV TFDTTYKTNK 240 FRMPLGVFVG VNNHLQSTIF AIALLRDETI ESFQWVFSTF LRCINGKHPI CILTDQCPSM 300 AEAIPTVLPD TLHKLRRWHV VKKYRDDLVK IYAQQPAFKD KLHSILNWPL MPTEFEDAWA 360 GLMNKYSLQE DEKHWRSYTV NRPEVFETAA CPPVGDELQW KITL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g11846.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317122.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K2CWP4 | 0.0 | A0A2K2CWP4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G11810.1 | 1e-161 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-60 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g11846.1.p |